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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_01439 and PFR28_01440 are separated by 148 nucleotides
PFR28_01440 and PFR28_01441 overlap by 4 nucleotides
PFR28_01441 and PFR28_01442 overlap by 4 nucleotides
PFR28_01442 and PFR28_01443 are separated by 296 nucleotides
PFR28_01439: PFR28_01439 - N-ethylmaleimide reductase, at 1,569,142 to 1,570,254
_01439
PFR28_01440: PFR28_01440 - Nicotinate dehydrogenase subunit B, at 1,570,403 to 1,572,640
_01440
PFR28_01441: PFR28_01441 - Nicotinate dehydrogenase subunit A, at 1,572,637 to 1,573,110
_01441
PFR28_01442: PFR28_01442 - Nicotinate dehydrogenase subunit B, at 1,573,107 to 1,574,387
_01442
PFR28_01443: PFR28_01443 - hypothetical protein, at 1,574,684 to 1,575,883
_01443
Group
Condition
PFR28
_01439
PFR28
_01440
PFR28
_01441
PFR28
_01442
PFR28
_01443
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.1
-0.2
-0.7
-0.5
+0.1
carbon source
Glycocyamine 10 mM (C)
-0.4
-0.1
-0.4
-0.2
-0.1
carbon source
L-Leucine (C) 10 mM
-0.1
-0.2
-0.3
-0.0
-0.5
carbon source
butyrate (C)
-0.2
+0.2
-0.3
-0.0
-0.4
carbon source
L-Lysine (C) 10 mM
+0.3
-0.1
-0.1
-0.1
-0.4
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
-0.6
+0.4
-0.1
-0.0
+0.0
carbon source
D-Ribose carbon 10 mM
+0.4
-0.1
-0.1
-0.2
-0.4
carbon source
Betaine (C)
-0.1
+0.1
+0.4
-0.3
-0.2
carbon source
L-Lactate (C) 10 mM
+0.2
+0.2
-0.1
-0.2
-0.3
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.2
+0.2
-0.4
-0.0
-0.2
carbon source
butyrate (C) 10 mM
-0.5
+0.0
+0.0
+0.3
+0.2
carbon source
Guanosine (C)
-0.3
+0.4
+0.2
+0.2
-0.4
carbon source
trans-aconitic (C)
+0.4
+0.3
+0.0
-0.3
-0.2
carbon source
Inosine (C)
+0.4
+0.1
+0.2
-0.2
-0.2
carbon source
L-Malic (C)
+0.4
+0.2
+0.2
-0.1
-0.3
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.4
+0.1
+0.2
-0.3
-0.1
carbon source
butyrate (C)
+0.5
+0.0
+0.2
-0.3
-0.1
carbon source
Vanillic Acid (C) 2.5 mM
+0.4
+0.1
+0.0
-0.3
+0.1
carbon source
D-Trehalose (C) 5 mM
+0.3
-0.1
-0.2
+0.1
+0.3
carbon source
Shikimic Acid (C) 10 mM
+0.5
-0.1
+0.2
-0.1
-0.0
carbon source
4-Acetoxy-3-methoxycinnamic (C)
-0.2
+0.4
+0.2
+0.2
-0.1
carbon source
octanoate (C)
+0.3
+0.0
+0.3
-0.1
+0.4
carbon source
L-Valine (C) 10 mM
+0.2
+0.2
+0.3
-0.1
+0.2
carbon source
D-Mannose carbon 10 mM
+0.5
+0.1
+0.3
+0.3
-0.3
carbon source
Guanosine (C)
+0.9
+0.1
+0.2
-0.0
-0.2
carbon source
butyrate (C)
+0.3
+0.3
-0.2
+0.3
+0.2
carbon source
2-Keto-D-gluconic hemicalcium salt (C) 10 mM
+0.1
+0.0
+0.3
+0.4
+0.2
carbon source
D-Ribose (C) 10 mM
+0.3
-0.0
+0.3
+0.2
+0.4
carbon source
p-Coumaric (C)
+0.4
+0.1
+0.4
+0.2
+0.1
carbon source
methyl ferulate (C)
+0.5
+0.2
+0.2
+0.1
+0.4
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PFR28_01441
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PFR28_01443
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