Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_01349 and PFR28_01350 are separated by 116 nucleotidesPFR28_01350 and PFR28_01351 are separated by 204 nucleotidesPFR28_01351 and PFR28_01352 are separated by 111 nucleotidesPFR28_01352 and PFR28_01353 overlap by 1 nucleotides PFR28_01349: PFR28_01349 - hypothetical protein, at 1,466,314 to 1,467,597 _01349 PFR28_01350: PFR28_01350 - hypothetical protein, at 1,467,714 to 1,468,658 _01350 PFR28_01351: PFR28_01351 - putative HTH-type transcriptional regulator, at 1,468,863 to 1,469,903 _01351 PFR28_01352: PFR28_01352 - LexA repressor, at 1,470,015 to 1,470,632 _01352 PFR28_01353: PFR28_01353 - hypothetical protein, at 1,470,632 to 1,471,261 _01353
Group Condition PFR28_01349 PFR28_01350 PFR28_01351 PFR28_01352 PFR28_01353
carbon source p-Coumaric (C) 2.5 mM -0.1 -0.2 -0.3 -0.6 N.D.
carbon source p-Coumaric (C) 2.5 mM +0.1 -0.3 -0.4 -0.5 N.D.
carbon source Vanillic Acid (C) 2.5 mM +0.1 -0.1 -0.3 -0.7 N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.5 +0.0 -0.5 -1.0 N.D.
carbon source D,L-Malic Acid (C) -0.0 -0.2 -0.6 -0.2 N.D.
carbon source caffeic (C) 2.5 mM +0.2 -0.1 -0.4 -0.7 N.D.
carbon source Shikimic Acid (C) 10 mM +0.1 -0.0 -0.4 -0.7 N.D.
carbon source caffeic (C) 2.5 mM -0.1 -0.1 -0.2 -0.6 N.D.
carbon source Vanillic Acid (C) 2.5 mM +0.1 +0.1 -0.4 -0.7 N.D.
carbon source Glycocyamine 20 mM (C) -0.1 +0.1 -0.1 -0.6 N.D.
carbon source Vanillic Acid (C) 2.5 mM +0.3 -0.1 -0.6 -0.3 N.D.
carbon source Shikimic Acid (C) 10 mM +0.2 -0.1 -0.2 -0.6 N.D.
carbon source p-Coumaric (C) -0.2 +0.0 +0.1 -0.6 N.D.
carbon source D-(+)-Galactosamine (C) 10 mM +0.2 -0.1 -0.3 -0.3 N.D.
carbon source Betaine (C) 2.5 mM +0.3 -0.1 -0.3 -0.4 N.D.
carbon source D-Trehalose (C) 5 mM -0.2 -0.1 +0.2 -0.4 N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.2 -0.1 -0.3 -0.3 N.D.
carbon source D,L-Malic Acid (C) 10 mM +0.2 +0.1 -0.4 -0.4 N.D.
carbon source Xanthosine (C) -0.2 -0.1 +0.3 -0.4 N.D.
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM +0.4 -0.2 -0.0 -0.5 N.D.
carbon source butyrate (C) 10 mM -0.2 -0.7 +0.1 +0.5 N.D.
carbon source methyl ferulate (C) -0.6 +0.0 +0.2 +0.2 N.D.
carbon source L-Hydroxyproline (C) 10 mM -0.3 +0.1 +0.4 -0.2 N.D.
carbon source NAG (C) 10 mM +0.3 +0.1 +0.1 -0.5 N.D.
carbon source butyrate (C) -0.4 +0.0 +0.2 +0.4 N.D.
carbon source m-Inositol carbon 10 mM +0.3 +0.2 -0.4 +0.1 N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.5 -0.3 +0.3 -0.3 N.D.
carbon source Inosine carbon 10 mM -0.0 +0.2 -0.2 +0.5 N.D.
carbon source Guanosine (C) -0.0 +0.2 +0.4 +0.5 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -0.0 +0.3 +0.4 +0.4 N.D.
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