Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_01054 and PFR28_01055 are separated by 1004 nucleotidesPFR28_01055 and PFR28_01056 are separated by 143 nucleotidesPFR28_01056 and PFR28_01057 are separated by 64 nucleotidesPFR28_01057 and PFR28_01058 are separated by 232 nucleotides PFR28_01054: PFR28_01054 - Dihydroorotate dehydrogenase (quinone), at 1,155,426 to 1,156,445 _01054 PFR28_01055: PFR28_01055 - Ribosomal RNA large subunit methyltransferase K/L, at 1,157,450 to 1,159,720 _01055 PFR28_01056: PFR28_01056 - hypothetical protein, at 1,159,864 to 1,162,248 _01056 PFR28_01057: PFR28_01057 - D-alanyl-D-alanine carboxypeptidase DacC, at 1,162,313 to 1,163,779 _01057 PFR28_01058: PFR28_01058 - hypothetical protein, at 1,164,012 to 1,164,356 _01058
Group Condition PFR28_01054 PFR28_01055 PFR28_01056 PFR28_01057 PFR28_01058
carbon source propionate (C) 20 mM N.D. +0.0 -0.7 -0.0 -0.8
carbon source D-Ribose (C) 10 mM N.D. +0.0 -0.3 +0.0 -1.0
carbon source butyrate (C) 10 mM N.D. -0.7 -0.4 +0.2 -0.3
carbon source 4-Guanidinobutyric (C) N.D. +0.1 -0.3 +0.5 -1.5
stress D-Glucose (C); with Chloride 400 mM N.D. +0.0 -0.1 -0.4 -0.5
carbon source Cytidine (C) N.D. -0.3 -0.1 -0.0 -0.6
carbon source methyl-trans-p-coumarate (C) N.D. +0.0 +0.1 -0.4 -0.6
carbon source Guanosine (C) N.D. -0.3 -0.1 +0.6 -0.6
carbon source methyl-trans-p-coumarate (C) N.D. +0.4 +0.3 -0.6 -0.6
carbon source Vanillic Acid (C) 2.5 mM N.D. -0.3 -0.1 -0.4 +0.4
carbon source L-Carnitine (C) N.D. -0.1 +0.0 +0.4 -0.4
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM N.D. +0.3 +0.7 -1.2 +0.2
carbon source D,L-Malic Acid (C) 10 mM N.D. +0.2 +0.2 +0.1 -0.5
carbon source trans-aconitic (C) 5 mM N.D. +0.1 +0.0 +0.4 -0.5
carbon source L-tyrosine (C) 10 mM N.D. +0.2 -0.2 +0.3 -0.2
carbon source L-Leucine (C) 10 mM N.D. +0.1 +0.2 +0.5 -0.4
carbon source L-Lactate (C) 10 mM N.D. +0.3 +0.0 +0.5 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct N.D. -0.4 +0.1 +0.1 +0.6
carbon source Citric Acid (C) 10 mM N.D. -0.0 +0.1 +0.8 -0.3
carbon source Fumarate (C) 20 mM N.D. +0.1 +0.0 +1.0 -0.3
carbon source L-Malic (C) 10 mM N.D. -0.0 +0.0 +0.6 +0.3
carbon source Betaine (C) 2.5 mM N.D. +0.0 +0.3 +0.4 +0.2
carbon source Guanosine (C) N.D. +0.2 +0.1 +0.6 -0.0
carbon source L-pyroglutamic carbon 10 mM N.D. +0.1 +0.1 +0.4 +0.4
carbon source acetate carbon 10 mM N.D. +0.1 -0.1 +0.8 +0.3
carbon source m-Inositol carbon 10 mM N.D. +0.2 -0.1 +0.7 +0.3
carbon source Citric Acid (C) 10 mM N.D. -0.0 +0.1 +1.0 -0.0
carbon source Citric Acid (C) 10 mM N.D. -0.1 -0.0 +1.1 +0.0
carbon source Fumarate (C) 20 mM N.D. +0.1 +0.1 +1.2 -0.1
carbon source Fumarate (C) 20 mM N.D. +0.2 +0.0 +1.3 -0.1
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