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Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_00990 and PFR28_00991 are separated by 95 nucleotides
PFR28_00991 and PFR28_00992 are separated by 58 nucleotides
PFR28_00992 and PFR28_00993 are separated by 21 nucleotides
PFR28_00993 and PFR28_00994 are separated by 313 nucleotides
PFR28_00990: PFR28_00990 - Free methionine-R-sulfoxide reductase, at 1,073,308 to 1,073,790
_00990
PFR28_00991: PFR28_00991 - hypothetical protein, at 1,073,886 to 1,076,828
_00991
PFR28_00992: PFR28_00992 - Virulence sensor protein BvgS, at 1,076,887 to 1,080,495
_00992
PFR28_00993: PFR28_00993 - Virulence factors putative positive transcription regulator BvgA, at 1,080,517 to 1,081,143
_00993
PFR28_00994: PFR28_00994 - Deoxyguanosinetriphosphate triphosphohydrolase, at 1,081,457 to 1,082,785
_00994
Group
Condition
PFR28
_00990
PFR28
_00991
PFR28
_00992
PFR28
_00993
PFR28
_00994
carbon source
butyrate (C)
-4.1
-0.0
+0.2
+0.2
+0.1
carbon source
Inosine (C)
-1.3
-0.0
+0.1
-0.7
+0.0
carbon source
butyrate (C) 10 mM
-1.8
+0.0
-0.0
-0.1
-0.0
carbon source
Cytidine carbon 10 mM
-1.9
+0.0
-0.0
+0.1
+0.2
carbon source
p-Coumaric (C)
-1.9
+0.2
+0.1
+0.1
-0.1
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
-1.1
-0.0
+0.3
-0.7
+0.1
carbon source
D-Trehalose (C) 5 mM
-0.7
+0.1
+0.0
-0.9
+0.0
carbon source
L-Lactate (C) 10 mM
-2.0
+0.0
+0.0
+0.4
+0.1
carbon source
2-Keto-D-gluconic hemicalcium salt (C) 10 mM
-1.4
-0.0
+0.2
-0.2
+0.0
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.5
+0.0
+0.2
-1.3
+0.2
carbon source
Cytidine (C)
+0.3
-0.2
-0.1
-1.1
+0.1
carbon source
Guanosine (C)
-0.8
+0.3
+0.1
-0.5
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.6
+0.2
+0.1
-0.6
+0.2
carbon source
Glycocyamine 10 mM (C)
-1.2
+0.0
+0.1
+0.3
+0.1
carbon source
Azelaic carbon 10 mM
-1.0
-0.2
+0.0
+0.5
+0.1
carbon source
L-Lactate (C) 10 mM
-1.1
-0.1
+0.2
+0.7
+0.2
carbon source
Choline (C) 10 mM
-0.8
+0.1
+0.1
+0.5
+0.1
carbon source
methyl-trans-p-coumarate (C)
+0.9
+0.1
+0.2
-1.1
-0.0
carbon source
Quinic Acid (C) 10 mM
-0.8
+0.1
+0.1
+0.6
+0.0
carbon source
D(+)-Glucuronic carbon 10 mM
-0.8
+0.2
+0.1
+0.7
+0.1
carbon source
butyrate (C) 10 mM
+0.8
+0.2
+0.2
-0.4
-0.1
carbon source
Malonic (C) 10 mM
-0.2
+0.2
+0.3
+0.9
+0.1
carbon source
Xanthosine (C)
+0.4
+0.2
+0.2
+0.8
-0.2
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.6
+0.0
+0.2
+0.6
+0.2
carbon source
4-Acetoxy-3-methoxycinnamic (C)
+1.1
+0.1
+0.3
+0.2
+0.1
carbon source
L-Arginine (C) 10 mM
+1.0
+0.2
+0.1
+0.4
+0.1
carbon source
Fumarate (C) 20 mM
+0.5
+0.3
+0.1
+1.0
+0.0
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
-0.0
+0.2
+0.3
+1.2
+0.3
carbon source
Malonic (C) 10 mM
+0.7
+0.2
+0.3
+0.9
+0.1
carbon source
Malonic (C) 10 mM
+1.2
+0.1
+0.3
+0.8
+0.1
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