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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_00949 and PFR28_00950 are separated by 114 nucleotides
PFR28_00950 and PFR28_00951 are separated by 234 nucleotides
PFR28_00951 and PFR28_00952 are separated by 101 nucleotides
PFR28_00952 and PFR28_00953 are separated by 250 nucleotides
PFR28_00949: PFR28_00949 - hypothetical protein, at 1,032,880 to 1,034,361
_00949
PFR28_00950: PFR28_00950 - '3'-5' ssDNA/RNA exonuclease TatD' transl_table=11, at 1,034,476 to 1,035,285
_00950
PFR28_00951: PFR28_00951 - Membrane-bound lytic murein transglycosylase F, at 1,035,520 to 1,036,941
_00951
PFR28_00952: PFR28_00952 - Putative oxidoreductase MhqP, at 1,037,043 to 1,037,477
_00952
PFR28_00953: PFR28_00953 - hypothetical protein, at 1,037,728 to 1,038,036
_00953
Group
Condition
PFR28
_00949
PFR28
_00950
PFR28
_00951
PFR28
_00952
PFR28
_00953
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.9
-0.3
-0.1
-0.2
-1.4
carbon source
butyrate (C)
+0.0
-0.3
-0.2
-0.8
-0.5
carbon source
Glycocyamine 20 mM (C)
-0.1
-0.4
-0.2
-0.3
-0.7
carbon source
Vanillic Acid (C) 2.5 mM
-0.5
-0.7
+0.4
-0.9
+0.0
carbon source
L-Lysine (C) 10 mM
-0.1
-0.2
+0.1
-0.8
-0.5
carbon source
caffeic (C) 2.5 mM
-0.6
-0.2
+0.2
-0.7
-0.1
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
-0.7
-0.1
+0.4
-1.0
+0.2
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.6
-0.1
+0.4
-0.6
-0.2
carbon source
p-Coumaric (C) 2.5 mM
-0.6
-0.0
+0.3
-0.7
-0.1
carbon source
D,L-Malic Acid (C)
+0.2
-0.1
-0.2
-0.7
-0.3
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.5
+0.1
+0.2
-0.5
-0.3
carbon source
caffeic (C) 2.5 mM
-0.7
-0.0
+0.3
-0.6
+0.1
carbon source
p-Coumaric (C) 2.5 mM
-0.8
-0.0
+0.2
-0.4
+0.2
carbon source
Ferulic Acid (C) 2.5 mM
-0.5
+0.1
+0.3
-0.5
-0.1
carbon source
L-Arginine (C) 10 mM
-0.2
-0.2
+0.0
-0.5
+0.3
carbon source
Vanillic Acid (C) 2.5 mM
-0.6
+0.1
+0.3
-0.7
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.7
-0.6
+0.3
+0.2
+0.1
carbon source
Betaine (C)
+0.0
+0.4
-0.1
-0.6
-0.3
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.5
-0.1
+0.3
-0.4
+0.2
carbon source
Guanosine (C)
-0.3
+0.2
+0.0
+0.4
-0.7
carbon source
Ferulic Acid (C) 2.5 mM
-0.5
-0.1
+0.3
-0.3
+0.2
carbon source
Adenosine (C) 10 mM
-0.2
-0.0
+0.2
-0.6
+0.3
carbon source
caffeic (C) 2.5 mM
-0.4
+0.1
+0.3
-0.3
+0.2
carbon source
L-Lactate (C) 10 mM
-0.7
-0.5
-0.0
+0.5
+0.5
carbon source
Guanosine (C)
+0.4
-0.9
+0.1
+0.5
-0.0
carbon source
L-Lysine (C) 10 mM
+0.1
+0.2
-0.2
-0.5
+0.6
carbon source
Choline chloride (C)
+0.3
+0.4
+0.1
+0.1
-0.6
carbon source
butyrate (C) 10 mM
+0.2
-0.3
-0.1
+0.7
+0.3
carbon source
butyrate (C) 10 mM
+0.4
-0.1
+0.3
+0.4
+0.2
carbon source
D,L-Lactate (C) 20 mM
+0.3
+0.1
+0.4
+0.3
+0.5
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PFR28_00951
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