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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_00870 and PFR28_00871 overlap by 4 nucleotides
PFR28_00871 and PFR28_00872 overlap by 4 nucleotides
PFR28_00872 and PFR28_00873 overlap by 8 nucleotides
PFR28_00873 and PFR28_00874 are separated by 14 nucleotides
PFR28_00870: PFR28_00870 - Cytochrome c-type biogenesis protein CcmF, at 940,360 to 942,348
_00870
PFR28_00871: PFR28_00871 - Thiol:disulfide interchange protein DsbE, at 942,345 to 942,881
_00871
PFR28_00872: PFR28_00872 - Cytochrome c-type biogenesis protein CcmH, at 942,878 to 943,351
_00872
PFR28_00873: PFR28_00873 - hypothetical protein, at 943,344 to 944,552
_00873
PFR28_00874: PFR28_00874 - hypothetical protein, at 944,567 to 944,974
_00874
Group
Condition
PFR28
_00870
PFR28
_00871
PFR28
_00872
PFR28
_00873
PFR28
_00874
carbon source
D(+)-Glucuronic carbon 10 mM
N.D.
N.D.
N.D.
-3.2
+0.1
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
N.D.
N.D.
N.D.
-2.8
+0.1
carbon source
L-Lysine (C) 10 mM
N.D.
N.D.
N.D.
-2.6
-0.1
carbon source
Adenosine (C) 10 mM
N.D.
N.D.
N.D.
-2.5
+0.0
carbon source
L-Lysine (C) 10 mM
N.D.
N.D.
N.D.
-2.3
-0.1
carbon source
Malonic (C) 10 mM
N.D.
N.D.
N.D.
-2.4
-0.0
carbon source
butyrate (C) 10 mM
N.D.
N.D.
N.D.
-2.5
+0.2
carbon source
D(+)-Glucuronic carbon 10 mM
N.D.
N.D.
N.D.
-2.3
-0.1
carbon source
D(+)-Glucuronic carbon 10 mM
N.D.
N.D.
N.D.
-2.3
-0.1
carbon source
Xanthosine (C) 10 mM
N.D.
N.D.
N.D.
-2.3
-0.0
carbon source
L-Lysine (C) 10 mM
N.D.
N.D.
N.D.
-2.2
-0.1
carbon source
Malonic (C) 10 mM
N.D.
N.D.
N.D.
-2.3
-0.1
carbon source
L-Leucine (C) 10 mM
N.D.
N.D.
N.D.
-2.4
+0.1
carbon source
L-Arginine (C) 10 mM
N.D.
N.D.
N.D.
-2.3
+0.2
carbon source
Malonic (C) 10 mM
N.D.
N.D.
N.D.
-2.0
-0.1
carbon source
L-Arginine (C) 10 mM
N.D.
N.D.
N.D.
-1.9
-0.2
carbon source
L-Leucine (C) 10 mM
N.D.
N.D.
N.D.
-1.9
+0.0
carbon source
D-(+)-Galactosamine (C) 10 mM
N.D.
N.D.
N.D.
-1.8
-0.2
carbon source
D-(+)-Galactosamine (C) 10 mM
N.D.
N.D.
N.D.
-2.0
+0.1
carbon source
L-Arginine (C) 10 mM
N.D.
N.D.
N.D.
-1.8
-0.1
carbon source
D-Galacturonic Acid (C) 10 mM
N.D.
N.D.
N.D.
-1.8
-0.1
carbon source
5-Aminovaleric carbon 10 mM
N.D.
N.D.
N.D.
-1.9
+0.1
carbon source
5-Aminovaleric carbon 10 mM
N.D.
N.D.
N.D.
-1.9
+0.1
carbon source
acetate carbon 10 mM
N.D.
N.D.
N.D.
-1.7
-0.1
carbon source
propionate carbon 20 mM
N.D.
N.D.
N.D.
-1.8
-0.0
carbon source
4-Guanidinobutyric (C) 10 mM
N.D.
N.D.
N.D.
-1.8
-0.0
carbon source
D-(+)-Galactosamine (C) 10 mM
N.D.
N.D.
N.D.
-1.7
-0.1
carbon source
Guanosine carbon 10 mM
N.D.
N.D.
N.D.
-1.8
+0.1
carbon source
D-Ribose carbon 10 mM
N.D.
N.D.
N.D.
-1.8
+0.1
carbon source
Adenosine (C) 10 mM
N.D.
N.D.
N.D.
-1.9
+0.2
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