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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_00817 and PFR28_00818 are separated by 15 nucleotides
PFR28_00818 and PFR28_00819 are separated by 49 nucleotides
PFR28_00819 and PFR28_00820 are separated by 220 nucleotides
PFR28_00820 and PFR28_00821 are separated by 85 nucleotides
PFR28_00817: PFR28_00817 - hypothetical protein, at 888,800 to 889,870
_00817
PFR28_00818: PFR28_00818 - Rhamnosyl O-methyltransferase, at 889,886 to 890,623
_00818
PFR28_00819: PFR28_00819 - hypothetical protein, at 890,673 to 893,606
_00819
PFR28_00820: PFR28_00820 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 893,827 to 894,753
_00820
PFR28_00821: PFR28_00821 - hypothetical protein, at 894,839 to 896,131
_00821
Group
Condition
PFR28
_00817
PFR28
_00818
PFR28
_00819
PFR28
_00820
PFR28
_00821
carbon source
2-Keto-D-gluconic hemicalcium salt (C) 10 mM
-1.0
-0.8
-0.8
-2.9
+0.4
carbon source
2-Keto-D-gluconic hemicalcium salt (C) 10 mM
-1.1
-1.0
-1.0
-2.4
+0.7
carbon source
2-Keto-D-gluconic hemicalcium salt (C) 10 mM
-1.0
-0.9
-0.9
-2.3
+0.9
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.3
-0.2
-0.1
-1.1
+0.1
carbon source
L-Carnitine (C) 10 mM
-0.2
-0.2
-0.0
-1.0
-0.1
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
-0.3
-0.2
+0.0
-0.9
+0.2
carbon source
butyrate (C) 10 mM
-0.4
-0.2
-0.4
+0.7
+0.1
carbon source
octanoate (C)
-0.3
-0.3
-0.1
+1.2
-0.1
carbon source
octanoate (C)
-0.3
-0.1
-0.3
+1.1
+0.1
stress
D-Glucose (C); with Chloride 400 mM
-0.2
-0.2
-0.1
+0.9
+0.2
carbon source
Guanosine (C)
-0.1
-0.1
-0.3
+1.1
-0.0
carbon source
octanoate (C)
-0.1
-0.2
-0.0
+1.1
-0.1
carbon source
butyrate (C)
-0.3
-0.1
+0.0
+0.9
+0.3
stress
D-Glucose (C); with Chloride 400 mM
-0.2
-0.1
-0.1
+1.2
+0.2
carbon source
butyrate (C) 10 mM
-0.1
+0.1
-0.3
+1.1
+0.2
stress
D-Glucose (C); with Chloride 200 mM
-0.2
-0.1
+0.0
+1.0
+0.3
carbon source
butyrate (C)
-0.2
-0.0
-0.1
+1.3
-0.0
carbon source
methyl-trans-p-coumarate (C)
-0.1
-0.1
+0.3
+1.2
-0.3
carbon source
caffeic (C)
-0.1
+0.1
+0.1
+1.0
+0.1
carbon source
Fumarate (C) 20 mM
-0.1
-0.0
+0.0
+1.5
-0.1
carbon source
Fumarate (C) 20 mM
-0.0
-0.1
+0.1
+1.4
+0.0
carbon source
L-Valine (C) 10 mM
-0.1
+0.2
+0.2
+1.2
-0.0
carbon source
Fumarate (C) 20 mM
-0.1
+0.1
-0.0
+1.5
-0.1
carbon source
methyl-trans-p-coumarate (C)
-0.1
-0.0
+0.3
+1.3
+0.0
carbon source
methyl-trans-p-coumarate (C)
-0.1
-0.2
+0.3
+1.5
-0.0
carbon source
L-Valine (C) 10 mM
+0.0
+0.3
+0.3
+1.0
+0.0
carbon source
propionate carbon 20 mM
-0.3
+0.0
-0.1
+1.7
+0.3
carbon source
L-Valine (C) 10 mM
+0.1
+0.1
+0.2
+1.3
+0.1
carbon source
propionate carbon 20 mM
-0.2
-0.0
-0.1
+1.9
+0.2
carbon source
propionate carbon 20 mM
-0.2
-0.1
-0.1
+1.9
+0.3
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PFR28_00818
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PFR28_00819
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PFR28_00821
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