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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_00792 and PFR28_00793 overlap by 7 nucleotides
PFR28_00793 and PFR28_00794 are separated by 162 nucleotides
PFR28_00794 and PFR28_00795 are separated by 135 nucleotides
PFR28_00795 and PFR28_00796 are separated by 2 nucleotides
PFR28_00792: PFR28_00792 - hypothetical protein, at 860,610 to 860,897
_00792
PFR28_00793: PFR28_00793 - hypothetical protein, at 860,891 to 861,781
_00793
PFR28_00794: PFR28_00794 - HTH-type transcriptional activator RhaS, at 861,944 to 862,693
_00794
PFR28_00795: PFR28_00795 - UDP-2,3-diacylglucosamine hydrolase, at 862,829 to 863,644
_00795
PFR28_00796: PFR28_00796 - hypothetical protein, at 863,647 to 863,958
_00796
Group
Condition
PFR28
_00792
PFR28
_00793
PFR28
_00794
PFR28
_00795
PFR28
_00796
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.0
-0.0
-0.9
-0.7
-1.5
stress
D-Glucose (C); with Chloride 400 mM
-0.6
-0.3
-0.1
-0.1
-0.6
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.1
-0.1
-0.3
-0.1
-1.2
carbon source
Vanillic Acid (C) 2.5 mM
-0.2
+0.1
-0.3
+0.0
-1.2
carbon source
Ferulic Acid (C) 2.5 mM
-0.2
+0.1
-0.1
-0.1
-1.2
carbon source
L-Carnitine (C)
-0.4
-0.3
-0.5
-0.2
-0.2
carbon source
Vanillic Acid (C) 2.5 mM
-0.0
+0.0
-0.6
+0.1
-1.0
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.1
-0.2
-0.1
-0.1
-1.2
carbon source
caffeic (C) 2.5 mM
-0.1
+0.1
-0.1
-0.2
-1.1
carbon source
octanoate (C)
-0.8
+0.2
-0.2
-0.3
-0.3
carbon source
p-Coumaric (C) 2.5 mM
+0.1
-0.1
+0.0
-0.1
-1.3
carbon source
Inosine carbon 10 mM
-0.2
+0.1
-0.8
-0.1
-0.3
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.3
+0.1
-0.5
-0.1
-1.1
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
+0.4
-0.0
-0.1
-0.2
-1.4
carbon source
Ferulic Acid (C) 2.5 mM
+0.3
-0.0
+0.0
-0.1
-1.4
carbon source
p-Coumaric (C) 2.5 mM
+0.1
+0.0
-0.0
-0.1
-1.2
carbon source
Betaine (C) 2.5 mM
+0.2
+0.2
-0.7
-0.2
-0.7
carbon source
caffeic (C) 2.5 mM
+0.0
+0.1
-0.1
-0.1
-1.1
carbon source
L-Phenylalanine carbon 5 mM
+0.1
-0.2
-0.3
-0.2
-0.4
carbon source
p-Coumaric (C) 2.5 mM
+0.1
+0.1
+0.0
-0.1
-1.2
carbon source
butyrate (C) 10 mM
-0.4
+0.1
-1.0
+0.2
+0.0
carbon source
Ferulic Acid (C) 2.5 mM
+0.1
+0.1
+0.2
-0.1
-1.1
carbon source
methyl-trans-p-coumarate (C)
+0.2
+0.0
-0.7
+0.0
-0.5
carbon source
caffeic (C) 2.5 mM
+0.2
+0.1
-0.2
-0.0
-0.9
carbon source
Glycocyamine 20 mM (C)
-0.3
-0.2
+0.4
-0.2
-0.3
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.3
+0.2
-0.0
+0.2
-1.2
carbon source
Vanillic Acid (C) 2.5 mM
+0.3
-0.1
+0.4
-0.1
-1.1
carbon source
Guanosine (C)
-0.3
+0.2
+0.4
-0.1
-0.6
carbon source
sn-glycero-3-phosphocholine (C)
-0.2
+0.4
-0.5
+0.2
+0.1
carbon source
D-Ribose (C) 10 mM
+0.4
-0.2
-0.2
+0.1
+0.7
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