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Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_00743 and PFR28_00744 are separated by 139 nucleotides
PFR28_00744 and PFR28_00745 are separated by 206 nucleotides
PFR28_00745 and PFR28_00746 are separated by 81 nucleotides
PFR28_00746 and PFR28_00747 are separated by 4 nucleotides
PFR28_00743: PFR28_00743 - Porin O, at 786,036 to 787,346
_00743
PFR28_00744: PFR28_00744 - hypothetical protein, at 787,486 to 788,610
_00744
PFR28_00745: PFR28_00745 - Putative multidrug export ATP-binding/permease protein, at 788,817 to 790,649
_00745
PFR28_00746: PFR28_00746 - Peptidyl-prolyl cis-trans isomerase A, at 790,731 to 791,297
_00746
PFR28_00747: PFR28_00747 - (E)-2-((N-methylformamido)methylene)succinate hydrolase, at 791,302 to 792,105
_00747
Group
Condition
PFR28
_00743
PFR28
_00744
PFR28
_00745
PFR28
_00746
PFR28
_00747
carbon source
caffeic (C)
+0.0
-0.2
+0.0
-0.5
-0.3
carbon source
Cytidine (C)
-0.1
-0.2
+0.0
-0.4
-0.1
carbon source
L-tyrosine 5 mM (C)
-0.2
-0.2
-0.1
-0.2
-0.1
carbon source
D-Trehalose (C) 5 mM
-0.1
+0.0
-0.1
-0.4
-0.2
carbon source
Adenosine (C) 10 mM
+0.1
-0.2
-0.0
-0.4
+0.0
carbon source
methyl ferulate (C)
-0.1
+0.0
+0.1
+0.1
-0.5
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
+0.1
+0.1
+0.4
-0.3
-0.5
carbon source
sn-glycero-3-phosphocholine (C)
-0.0
-0.3
-0.0
+0.5
-0.3
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
+0.2
+0.1
-0.3
+0.1
-0.3
carbon source
L-Lactate (C) 10 mM
+0.1
+0.1
-0.0
-0.3
+0.3
carbon source
Shikimic Acid (C) 10 mM
-0.3
+0.1
-0.1
+0.4
+0.1
carbon source
Guanosine (C)
+0.2
+0.1
+0.1
+0.1
-0.3
carbon source
Xanthosine (C)
+0.0
-0.2
+0.2
+0.4
-0.2
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.4
+0.2
+0.1
-0.2
+0.1
carbon source
butyrate (C) 10 mM
+0.2
-0.0
+0.2
-0.4
+0.5
carbon source
pyruvate carbon 10 mM
-0.1
+0.1
+0.0
+0.4
+0.2
carbon source
Shikimic Acid (C) 10 mM
+0.1
+0.2
-0.1
+0.4
-0.0
carbon source
L-Glutamic carbon 10 mM
-0.0
-0.0
-0.1
+0.6
+0.1
carbon source
D(+)-Glucuronic carbon 10 mM
+0.0
+0.1
-0.1
+0.5
+0.1
carbon source
5-Aminovaleric carbon 10 mM
+0.0
+0.2
-0.1
+0.3
+0.2
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.3
+0.4
+0.2
-0.4
+0.2
carbon source
Ferulic Acid (C) 2.5 mM
+0.1
-0.1
+0.1
+0.5
+0.1
carbon source
Ferulic Acid (C) 2.5 mM
+0.2
+0.0
+0.1
+0.4
-0.1
carbon source
Vanillic Acid (C) 2.5 mM
+0.1
-0.0
-0.0
+0.6
+0.0
carbon source
L-pyroglutamic carbon 10 mM
+0.0
+0.3
+0.0
+0.3
+0.2
carbon source
caffeic (C) 2.5 mM
+0.1
+0.0
+0.1
+0.5
+0.1
carbon source
L-pyroglutamic carbon 10 mM
+0.1
+0.3
-0.0
+0.3
+0.2
carbon source
butyrate (C)
-0.1
-0.0
+0.1
+0.7
+0.2
carbon source
D-Glucosamine Hydrochloride (C) 10 mM
+0.1
-0.1
+0.1
+0.6
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.0
+0.3
+0.3
+0.1
+0.4
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