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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_00720 and PFR28_00721 are separated by 145 nucleotides
PFR28_00721 and PFR28_00722 are separated by 110 nucleotides
PFR28_00722 and PFR28_00723 are separated by 286 nucleotides
PFR28_00723 and PFR28_00724 are separated by 164 nucleotides
PFR28_00720: PFR28_00720 - hypothetical protein, at 759,631 to 760,005
_00720
PFR28_00721: PFR28_00721 - hypothetical protein, at 760,151 to 760,438
_00721
PFR28_00722: PFR28_00722 - hypothetical protein, at 760,549 to 761,022
_00722
PFR28_00723: PFR28_00723 - Dipeptidyl aminopeptidase BI, at 761,309 to 763,363
_00723
PFR28_00724: PFR28_00724 - hypothetical protein, at 763,528 to 764,016
_00724
Group
Condition
PFR28
_00720
PFR28
_00721
PFR28
_00722
PFR28
_00723
PFR28
_00724
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.5
+0.2
-5.6
+0.3
+0.2
carbon source
Guanosine (C)
-0.0
-2.6
-0.6
+0.4
-0.2
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.9
-0.7
-1.0
+0.0
-0.4
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.6
-1.2
+0.1
-0.1
-0.9
carbon source
Vanillic Acid (C) 2.5 mM
-0.6
-1.8
-0.6
+0.1
+0.1
carbon source
butyrate (C)
+0.0
+0.1
-2.4
+0.1
-0.4
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-1.3
-0.6
-0.3
-0.0
-0.2
carbon source
L-Lysine (C) 10 mM
+0.1
-2.1
-0.6
-0.0
+0.2
carbon source
p-Coumaric (C) 2.5 mM
-0.9
-0.5
-0.7
+0.1
-0.0
carbon source
Inosine carbon 10 mM
-0.5
-1.1
-0.1
+0.1
-0.4
carbon source
Ferulic Acid (C) 2.5 mM
-0.9
-0.8
-0.3
+0.1
+0.0
carbon source
Vanillic Acid (C) 2.5 mM
-1.0
-1.0
-0.0
+0.2
+0.1
carbon source
Ferulic Acid (C) 2.5 mM
-0.8
-0.5
-0.6
+0.1
+0.0
carbon source
caffeic (C) 2.5 mM
-1.1
+0.2
-0.4
+0.0
-0.4
carbon source
p-Coumaric (C) 2.5 mM
-0.8
-0.5
-0.5
+0.1
-0.1
carbon source
Xanthosine (C)
-0.2
-1.4
+0.7
-0.1
-0.2
carbon source
p-Coumaric (C)
+0.4
-0.5
-0.4
-0.1
-0.5
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-1.4
+1.0
-0.1
+0.1
-0.4
carbon source
Choline chloride (C)
-0.2
-1.1
+0.7
-0.1
-0.1
carbon source
Cytidine (C)
+0.5
-1.3
+0.4
-0.2
-0.1
carbon source
D-(+)-Galactosamine (C) 10 mM
+0.5
-0.8
-0.3
-0.2
+0.4
carbon source
L-Isoleucine (C) 10 mM
-0.3
+1.0
-1.1
-0.0
-0.1
carbon source
L-tyrosine 5 mM (C)
-0.4
+0.4
+0.6
-0.0
-0.7
carbon source
Guanosine (C)
-0.3
+1.1
-0.5
-0.3
-0.0
carbon source
Glycocyamine 20 mM (C)
-0.8
+0.5
+0.4
-0.1
+0.2
carbon source
Azelaic carbon 10 mM
+0.3
-0.8
+0.4
-0.0
+0.5
carbon source
L-Lactate (C) 10 mM
-0.3
+1.3
+0.5
+0.0
-1.1
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
+0.4
+1.3
-1.5
+0.1
+0.2
carbon source
D-Mannitol (C) 10 mM
-0.3
+0.9
-0.4
+0.1
+0.3
carbon source
D-Ribose (C) 10 mM
+0.1
+1.1
-0.7
+0.2
+0.3
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PFR28_00722
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