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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_00710 and PFR28_00711 are separated by 158 nucleotides
PFR28_00711 and PFR28_00712 are separated by 216 nucleotides
PFR28_00712 and PFR28_00713 overlap by 4 nucleotides
PFR28_00713 and PFR28_00714 are separated by 122 nucleotides
PFR28_00710: PFR28_00710 - HTH-type transcriptional regulator YidZ, at 750,230 to 751,345
_00710
PFR28_00711: PFR28_00711 - Phosphoethanolamine transferase EptA, at 751,504 to 753,153
_00711
PFR28_00712: PFR28_00712 - Ribonuclease D, at 753,370 to 754,503
_00712
PFR28_00713: PFR28_00713 - Protein YcgL, at 754,500 to 754,793
_00713
PFR28_00714: PFR28_00714 - Glyoxylate/hydroxypyruvate reductase A, at 754,916 to 755,848
_00714
Group
Condition
PFR28
_00710
PFR28
_00711
PFR28
_00712
PFR28
_00713
PFR28
_00714
carbon source
methyl-trans-p-coumarate (C)
+0.0
-0.1
-0.7
-0.5
-0.3
carbon source
methyl-trans-p-coumarate (C)
-0.1
+0.1
-0.7
-0.2
-0.3
carbon source
methyl ferulate (C)
-0.3
+0.1
-0.5
-0.3
-0.0
carbon source
methyl-trans-p-coumarate (C)
+0.2
+0.1
-0.7
-0.4
-0.1
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.1
-0.0
-0.4
-0.6
-0.0
carbon source
caffeic (C) 2.5 mM
+0.1
-0.0
-0.5
-0.5
+0.1
carbon source
methyl ferulate (C)
-0.1
+0.1
-0.3
-0.5
+0.1
carbon source
Guanosine (C)
+0.0
+0.1
-0.6
-0.5
+0.2
carbon source
NAG (C) 10 mM
-0.1
+0.1
-0.4
-0.5
+0.2
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.3
-0.1
-0.3
-0.5
+0.0
carbon source
Shikimic Acid carbon 10 mM
+0.0
-0.7
+0.2
-0.2
+0.2
carbon source
sn-glycero-3-phosphocholine (C)
+0.2
+0.2
-0.4
-0.4
-0.1
carbon source
p-Coumaric (C) 2.5 mM
+0.2
-0.1
-0.2
-0.4
+0.1
carbon source
Shikimic Acid carbon 10 mM
+0.1
-0.6
+0.2
-0.2
+0.1
carbon source
p-Coumaric (C) 2.5 mM
+0.3
+0.0
-0.2
-0.5
+0.1
carbon source
sn-glycero-3-phosphocholine (C)
+0.3
+0.2
-0.4
-0.2
-0.1
carbon source
Shikimic Acid carbon 10 mM
-0.2
-0.3
+0.3
-0.1
+0.1
carbon source
D-Ribose carbon 10 mM
-0.2
+0.2
+0.4
-0.3
-0.1
carbon source
butyrate (C) 10 mM
-0.2
-0.2
+0.5
-0.2
+0.1
carbon source
sn-glycero-3-phosphocholine (C) 10 mM
+0.2
+0.2
-0.2
-0.3
+0.3
carbon source
Cytidine (C)
+0.0
-0.1
+0.7
-0.4
+0.0
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.6
+0.1
+0.1
-0.5
+0.1
carbon source
Vanillic Acid (C) 2.5 mM
+0.1
+0.1
+0.4
-0.3
+0.2
carbon source
Xanthosine (C) 10 mM
+0.1
+0.1
+0.5
-0.3
+0.1
carbon source
Xanthosine (C) 10 mM
+0.1
+0.0
+0.6
-0.3
+0.2
carbon source
D-Ribose carbon 10 mM
-0.0
+0.0
+0.4
-0.2
+0.4
carbon source
Vanillic Acid (C) 2.5 mM
+0.1
-0.0
+0.7
-0.2
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.4
+0.0
+0.2
-0.4
+0.4
carbon source
Xanthosine (C) 10 mM
+0.1
-0.0
+0.6
-0.2
+0.3
carbon source
Cytidine (C)
+0.4
+0.2
+0.6
-0.2
+0.1
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