Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_00692 and PFR28_00693 are separated by 235 nucleotidesPFR28_00693 and PFR28_00694 are separated by 63 nucleotidesPFR28_00694 and PFR28_00695 are separated by 237 nucleotidesPFR28_00695 and PFR28_00696 are separated by 32 nucleotides PFR28_00692: PFR28_00692 - Sigma factor AlgU regulatory protein MucB, at 734,498 to 735,442 _00692 PFR28_00693: PFR28_00693 - Periplasmic serine endoprotease DegP, at 735,678 to 737,105 _00693 PFR28_00694: PFR28_00694 - Beta-barrel assembly-enhancing protease, at 737,169 to 738,602 _00694 PFR28_00695: PFR28_00695 - Sulfur carrier protein TusA, at 738,840 to 739,079 _00695 PFR28_00696: PFR28_00696 - hypothetical protein, at 739,112 to 740,182 _00696
Group Condition PFR28_00692 PFR28_00693 PFR28_00694 PFR28_00695 PFR28_00696
carbon source butyrate (C) 10 mM -0.4 -0.9 -1.8 -4.4 -0.5
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM -0.8 -1.5 -3.1 -1.8 +0.1
carbon source propionate carbon 20 mM +0.4 -0.6 -1.3 -5.3 -0.1
carbon source Betaine (C) 2.5 mM +0.1 -0.2 -1.2 -5.1 +0.1
carbon source Xanthosine (C) -0.2 -0.8 -1.0 -3.5 -0.5
carbon source L-Leucine (C) 10 mM -0.1 -0.4 -0.4 -5.0 -0.1
carbon source D-Glucuronic (C) 10 mM -0.6 -1.1 -1.3 -2.7 -0.2
carbon source propionate (C) 20 mM -0.5 -0.9 -0.3 -3.8 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +1.3 -2.1 -3.1 -1.2 -0.7
carbon source Guanosine carbon 10 mM +0.2 -0.3 +0.2 -5.6 -0.2
carbon source L-Leucine (C) 10 mM -0.5 +0.3 -0.0 -5.0 -0.4
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.6 -0.8 -1.5 -3.9 -0.1
carbon source propionate carbon 20 mM +0.2 -0.4 -1.4 -3.8 -0.2
carbon source Guanosine carbon 10 mM +0.3 -0.1 -0.2 -5.4 -0.2
carbon source acetate (C) 30 mM -0.2 -1.0 -0.4 -3.8 -0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM -0.2 -0.6 -0.7 -3.8 -0.1
carbon source propionate carbon 20 mM +0.5 -0.5 -1.9 -3.2 -0.3
carbon source L-Valine (C) 10 mM +0.1 -0.7 -0.4 -3.6 -0.8
carbon source acetate (C) 30 mM -0.3 -0.8 -0.4 -4.0 +0.2
carbon source Inosine (C) -0.0 +0.9 -1.5 -3.4 -0.5
carbon source methyl ferulate (C) +1.0 -1.2 -2.3 -2.0 -0.1
carbon source methyl ferulate (C) +0.9 -0.7 -1.7 -2.6 -0.4
carbon source Inosine (C) +0.3 +0.8 -0.9 -3.5 -0.3
carbon source Choline chloride (C) +0.4 +0.6 -0.8 -3.5 -0.2
carbon source methyl-trans-p-coumarate (C) +2.3 -0.5 -1.4 -2.7 -0.9
carbon source octanoate (C) +0.8 +0.6 -0.4 -3.7 -0.5
carbon source methyl-trans-p-coumarate (C) +2.6 -1.0 -1.5 -2.2 -0.8
carbon source D-Galactose (C) 10 mM -0.4 +0.6 +0.8 -3.7 +0.1
carbon source methyl-trans-p-coumarate (C) +2.5 -1.0 -1.2 -1.2 -0.7
carbon source D-Trehalose (C) 5 mM +0.9 +0.4 +1.3 -3.7 +0.2
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