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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_00643 and PFR28_00644 are separated by 114 nucleotides
PFR28_00644 and PFR28_00645 are separated by 1 nucleotides
PFR28_00645 and PFR28_00646 are separated by 133 nucleotides
PFR28_00646 and PFR28_00647 are separated by 252 nucleotides
PFR28_00643: PFR28_00643 - hypothetical protein, at 686,467 to 686,775
_00643
PFR28_00644: PFR28_00644 - hypothetical protein, at 686,890 to 687,480
_00644
PFR28_00645: PFR28_00645 - Major cardiolipin synthase ClsA, at 687,482 to 688,639
_00645
PFR28_00646: PFR28_00646 - Beta-xylosidase, at 688,773 to 691,064
_00646
PFR28_00647: PFR28_00647 - Protein LemA, at 691,317 to 691,925
_00647
Group
Condition
PFR28
_00643
PFR28
_00644
PFR28
_00645
PFR28
_00646
PFR28
_00647
carbon source
L-Carnitine (C) 10 mM
+0.2
-0.5
-0.5
-0.5
+0.1
carbon source
D,L-Malic Acid (C) 10 mM
-0.2
-0.6
-0.2
+0.3
-0.4
carbon source
L-Lactate (C) 10 mM
+0.3
-0.3
-0.3
-0.1
-0.7
carbon source
L-Lysine (C) 10 mM
+0.1
-0.3
-0.6
-0.2
+0.2
carbon source
D-(+)-Galactosamine (C) 10 mM
+0.3
-0.2
-0.4
-0.2
-0.1
carbon source
L-Leucine (C) 10 mM
+0.5
-0.3
-0.3
-0.1
-0.3
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.6
+0.2
+0.3
+0.1
-0.5
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.4
+0.2
+0.5
+0.1
-0.5
carbon source
D-Glucose carbon 10 mM
+0.3
-0.5
-0.1
+0.1
+0.3
carbon source
m-Inositol carbon 10 mM
+0.2
-0.2
-0.4
+0.1
+0.4
carbon source
NAG carbon 10 mM
+0.3
-0.4
-0.2
+0.1
+0.3
carbon source
D-Galactose carbon 10 mM
+0.2
-0.3
-0.3
+0.1
+0.5
carbon source
L-tyrosine (C) 10 mM
+0.4
-0.3
-0.4
+0.1
+0.3
carbon source
pyruvate carbon 10 mM
+0.4
-0.5
-0.0
+0.1
+0.3
carbon source
butyrate (C) 10 mM
+0.1
-0.3
+0.5
+0.3
+0.1
carbon source
caffeic (C) 2.5 mM
+0.3
+0.1
+0.3
+0.3
-0.2
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.2
+0.3
+0.1
+0.1
+0.6
carbon source
Citric Acid (C) 10 mM
-0.0
+0.4
+0.7
+0.0
-0.3
carbon source
p-Coumaric (C) 2.5 mM
+0.4
+0.2
+0.3
+0.3
-0.3
carbon source
D-Glucuronic (C) 10 mM
+0.2
+0.5
+0.2
-0.1
+0.3
carbon source
Vanillic Acid (C) 2.5 mM
+0.1
+0.1
+0.7
+0.4
-0.1
carbon source
Ferulic Acid (C) 2.5 mM
+0.4
+0.2
+0.6
+0.3
-0.1
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.6
+0.2
+0.2
+0.3
+0.0
carbon source
caffeic (C) 2.5 mM
+0.4
-0.0
+0.5
+0.5
-0.0
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.2
+0.1
+0.8
+0.3
-0.1
carbon source
methyl-trans-p-coumarate (C)
+0.3
+0.3
+0.3
+0.2
+0.3
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.4
+0.1
+0.4
+0.3
+0.2
carbon source
p-Coumaric (C) 2.5 mM
+0.5
+0.4
+0.6
+0.1
+0.0
carbon source
Vanillic Acid (C) 2.5 mM
+0.3
+0.1
+0.6
+0.5
+0.1
carbon source
Vanillic Acid (C) 2.5 mM
+0.4
+0.6
+0.5
+0.4
-0.2
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PFR28_00645
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PFR28_00646
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PFR28_00647
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