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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_00617 and PFR28_00618 are separated by 593 nucleotides
PFR28_00618 and PFR28_00619 are separated by 247 nucleotides
PFR28_00619 and PFR28_00620 are separated by 216 nucleotides
PFR28_00620 and PFR28_00621 overlap by 4 nucleotides
PFR28_00617: PFR28_00617 - hypothetical protein, at 657,849 to 658,046
_00617
PFR28_00618: PFR28_00618 - Pca regulon regulatory protein, at 658,640 to 659,482
_00618
PFR28_00619: PFR28_00619 - 4-hydroxybenzoate transporter PcaK, at 659,730 to 661,076
_00619
PFR28_00620: PFR28_00620 - 3-oxoadipate CoA-transferase subunit A, at 661,293 to 662,153
_00620
PFR28_00621: PFR28_00621 - 3-oxoadipate CoA-transferase subunit B, at 662,150 to 662,929
_00621
Group
Condition
PFR28
_00617
PFR28
_00618
PFR28
_00619
PFR28
_00620
PFR28
_00621
carbon source
Shikimic Acid carbon 10 mM
+0.5
-5.6
-5.2
-5.2
-5.7
carbon source
Shikimic Acid carbon 10 mM
+0.8
-4.9
-5.0
-4.4
-5.6
carbon source
Shikimic Acid carbon 10 mM
+0.6
-4.7
-4.7
-4.9
-5.1
carbon source
Shikimic Acid (C) 10 mM
-0.0
-4.5
-2.3
-4.4
-5.6
carbon source
Quinic Acid (C) 10 mM
+0.1
-5.6
-0.9
-5.2
-4.8
carbon source
Quinic Acid (C) 10 mM
+0.1
-5.2
-0.7
-4.5
-5.5
carbon source
Shikimic Acid (C) 10 mM
+0.1
-4.3
-2.5
-3.6
-5.0
carbon source
Shikimic Acid (C) 10 mM
+0.3
-4.3
-2.0
-3.4
-3.9
carbon source
p-Coumaric (C)
-0.5
-3.1
-0.5
-4.4
-3.6
carbon source
4-Acetoxy-3-methoxycinnamic (C)
+0.1
-4.2
+0.1
-4.1
-4.0
carbon source
4-Acetoxy-3-methoxycinnamic (C)
+0.1
-4.3
-0.0
-4.8
-3.1
carbon source
caffeic (C)
-0.3
-4.5
-0.2
-3.2
-3.8
carbon source
p-Coumaric (C)
-0.6
-3.1
-0.6
-2.6
-4.7
carbon source
caffeic (C) 2.5 mM
-1.0
-3.3
-0.1
-2.9
-4.0
carbon source
caffeic (C)
-0.5
-3.6
+0.1
-3.6
-3.5
carbon source
p-Coumaric (C)
-0.1
-2.8
-0.6
-3.4
-3.8
carbon source
caffeic (C)
-0.4
-3.4
-0.1
-3.2
-3.4
carbon source
caffeic (C) 2.5 mM
-0.7
-3.3
-0.0
-3.2
-3.1
carbon source
p-Coumaric (C) 2.5 mM
-0.8
-2.9
-0.4
-3.0
-3.1
carbon source
Ferulic Acid (C) 2.5 mM
-0.7
-3.0
-0.2
-3.2
-3.1
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-1.1
-3.0
+0.0
-2.6
-3.0
carbon source
caffeic (C) 2.5 mM
-0.8
-2.9
+0.1
-2.9
-3.0
carbon source
methyl ferulate (C)
-0.6
-2.9
-0.1
-3.3
-2.6
carbon source
Ferulic Acid (C) 2.5 mM
-0.5
-2.3
-0.3
-2.6
-3.3
carbon source
Vanillic Acid (C) 2.5 mM
-0.8
-1.8
-0.6
-2.4
-3.0
carbon source
p-Coumaric (C) 2.5 mM
-0.9
-2.2
-0.9
-2.2
-2.4
carbon source
Ferulic Acid (C) 2.5 mM
-0.9
-2.2
-0.2
-2.9
-2.4
carbon source
Vanillic Acid (C) 2.5 mM
-0.8
-1.6
-0.9
-2.6
-2.1
carbon source
p-Coumaric (C) 2.5 mM
-0.7
-1.9
-0.3
-2.5
-2.7
carbon source
Quinic Acid (C)
-0.5
-2.4
-0.7
-2.1
-2.0
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