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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_00513 and PFR28_00514 are separated by 135 nucleotides
PFR28_00514 and PFR28_00515 overlap by 7 nucleotides
PFR28_00515 and PFR28_00516 are separated by 193 nucleotides
PFR28_00516 and PFR28_00517 are separated by 138 nucleotides
PFR28_00513: PFR28_00513 - hypothetical protein, at 549,331 to 549,816
_00513
PFR28_00514: PFR28_00514 - hypothetical protein, at 549,952 to 550,452
_00514
PFR28_00515: PFR28_00515 - hypothetical protein, at 550,446 to 550,943
_00515
PFR28_00516: PFR28_00516 - Peptidoglycan-associated lipoprotein, at 551,137 to 551,832
_00516
PFR28_00517: PFR28_00517 - hypothetical protein, at 551,971 to 552,243
_00517
Group
Condition
PFR28
_00513
PFR28
_00514
PFR28
_00515
PFR28
_00516
PFR28
_00517
carbon source
p-Coumaric (C) 2.5 mM
+0.0
-0.2
-0.4
-0.3
N.D.
carbon source
Shikimic Acid (C) 10 mM
+0.1
-0.6
-0.3
+0.1
N.D.
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.3
-0.1
-0.6
-0.2
N.D.
carbon source
L-Lactate (C) 10 mM
-0.2
+0.2
-0.6
+0.0
N.D.
carbon source
caffeic (C) 2.5 mM
+0.3
-0.0
-0.3
-0.5
N.D.
carbon source
L-Hydroxyproline carbon 10 mM
-0.3
-0.0
-0.4
+0.2
N.D.
carbon source
Ferulic Acid (C) 2.5 mM
+0.3
-0.2
-0.4
-0.2
N.D.
carbon source
butyrate (C)
+0.3
-0.3
-0.3
-0.1
N.D.
carbon source
Ferulic Acid (C) 2.5 mM
+0.4
+0.2
-0.3
-0.3
N.D.
carbon source
pyruvate (C)
+0.1
+0.3
-0.1
-0.2
N.D.
carbon source
4-Guanidinobutyric (C) 10 mM
+0.2
-0.1
-0.3
+0.3
N.D.
carbon source
butyrate (C) 10 mM
-0.1
+0.4
+0.2
-0.3
N.D.
carbon source
2-Keto-D-gluconic hemicalcium salt (C) 10 mM
-0.3
+0.1
+0.1
+0.3
N.D.
carbon source
butyrate (C)
+0.4
-0.1
+0.1
-0.3
N.D.
carbon source
Azelaic carbon 10 mM
+0.2
-0.4
+0.3
+0.1
N.D.
carbon source
L-Lactate (C) 10 mM
+0.4
+0.2
-0.2
-0.1
N.D.
carbon source
Guanosine (C)
+0.2
-0.3
-0.1
+0.4
N.D.
carbon source
methyl ferulate (C)
-0.4
+0.3
+0.2
+0.2
N.D.
carbon source
Adenosine (C) 10 mM
+0.3
+0.2
-0.1
+0.2
N.D.
carbon source
butyrate (C) 10 mM
+0.2
+0.4
+0.2
-0.2
N.D.
carbon source
L-Valine (C) 10 mM
+0.2
-0.1
+0.1
+0.5
N.D.
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.1
+0.1
+0.3
+0.5
N.D.
carbon source
Betaine (C) 2.5 mM
+0.3
+0.3
-0.1
+0.3
N.D.
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.3
+0.3
+0.2
-0.0
N.D.
carbon source
L-tyrosine (C) 10 mM
+0.5
+0.4
+0.1
-0.1
N.D.
carbon source
L-Lactate (C) 10 mM
+0.4
+0.3
+0.1
+0.1
N.D.
carbon source
methyl-trans-p-coumarate (C)
-0.1
+0.5
+0.0
+0.4
N.D.
carbon source
L-Carnitine 10 mM (C)
+0.2
+0.3
+0.1
+0.3
N.D.
carbon source
L-Carnitine (C) 10 mM
+0.2
+0.4
+0.2
+0.3
N.D.
carbon source
Xanthosine (C) 10 mM
+0.1
+0.6
+0.2
+0.1
N.D.
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