Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_00507 and PFR28_00508 are separated by 342 nucleotidesPFR28_00508 and PFR28_00509 overlap by 4 nucleotidesPFR28_00509 and PFR28_00510 are separated by 131 nucleotidesPFR28_00510 and PFR28_00511 are separated by 153 nucleotides PFR28_00507: PFR28_00507 - Lysine/arginine/ornithine-binding periplasmic protein, at 541,787 to 542,569 _00507 PFR28_00508: PFR28_00508 - DNA ligase, at 542,912 to 544,600 _00508 PFR28_00509: PFR28_00509 - hypothetical protein, at 544,597 to 545,631 _00509 PFR28_00510: PFR28_00510 - Acyl-homoserine lactone acylase QuiP, at 545,763 to 548,213 _00510 PFR28_00511: PFR28_00511 - Isochorismatase family protein YecD, at 548,367 to 548,969 _00511
Group Condition PFR28_00507 PFR28_00508 PFR28_00509 PFR28_00510 PFR28_00511
carbon source L-Lysine (C) 10 mM -0.8 -0.0 +0.0 -0.2 -0.1
carbon source L-Carnitine (C) 10 mM -0.3 +0.1 -0.1 -0.1 -0.6
carbon source Betaine (C) 2.5 mM -0.3 +0.0 +0.1 -0.3 -0.4
carbon source butyrate (C) 10 mM -0.5 -0.2 +0.1 +0.2 -0.4
carbon source L-Lysine (C) 10 mM -1.0 +0.2 +0.1 -0.1 -0.0
carbon source L-Lysine (C) 10 mM -0.9 +0.2 -0.0 -0.0 +0.1
carbon source caffeic (C) 2.5 mM -0.2 +0.3 -0.0 -0.2 -0.5
carbon source caffeic (C) 2.5 mM -0.2 +0.2 +0.2 -0.4 -0.5
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.3 +0.1 +0.1 -0.5 +0.2
carbon source Ferulic Acid (C) 2.5 mM -0.2 +0.3 +0.1 -0.3 -0.3
carbon source butyrate (C) -0.2 +0.0 -0.6 -0.2 +0.5
carbon source L-Lysine (C) 10 mM -1.4 +0.4 +0.3 +0.1 +0.3
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.3 +0.3 +0.0 -0.4 +0.1
carbon source methyl-trans-p-coumarate (C) -0.4 -0.0 -0.2 -0.2 +0.6
carbon source octanoate (C) -0.4 -0.0 -0.1 -0.2 +0.5
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.1 -0.3 +0.0 +0.4 -0.4
carbon source propionate carbon 20 mM -0.4 +0.3 -0.2 +0.1 +0.1
carbon source Ferulic Acid (C) 2.5 mM -0.3 +0.4 +0.3 -0.3 -0.1
carbon source Betaine (C) -0.2 -0.0 +0.1 -0.4 +0.4
carbon source Inosine (C) +0.2 +0.0 -0.3 -0.3 +0.3
carbon source L-Phenylalanine carbon 5 mM +0.3 +0.5 -0.3 -0.1 -0.1
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM -0.2 +0.5 +0.3 -0.2 -0.1
carbon source caffeic (C) -0.3 +0.1 -0.1 -0.1 +0.7
carbon source Guanosine (C) -0.3 -0.2 -0.1 +0.1 +0.7
carbon source butyrate (C) 10 mM -0.4 +0.4 +0.1 +0.0 +0.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.1 +0.3 +0.1 -0.3 +0.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.6 +0.6 +0.5 +0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.3 +0.4 +0.4 -0.1 -0.1
carbon source methyl-trans-p-coumarate (C) -0.1 +0.1 +0.4 -0.3 +1.1
carbon source Guanosine (C) +0.3 +0.2 +0.2 +0.0 +0.8
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