Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_00389 and PFR28_00390 are separated by 74 nucleotidesPFR28_00390 and PFR28_00391 are separated by 33 nucleotidesPFR28_00391 and PFR28_00392 are separated by 296 nucleotidesPFR28_00392 and PFR28_00393 are separated by 63 nucleotides PFR28_00389: PFR28_00389 - Cysteine desulfurase SufS, at 424,511 to 425,716 _00389 PFR28_00390: PFR28_00390 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 425,791 to 426,825 _00390 PFR28_00391: PFR28_00391 - hypothetical protein, at 426,859 to 427,221 _00391 PFR28_00392: PFR28_00392 - Sodium, potassium, lithium and rubidium/H(+) antiporter, at 427,518 to 429,164 _00392 PFR28_00393: PFR28_00393 - LL-diaminopimelate aminotransferase, at 429,228 to 430,427 _00393
Group Condition PFR28_00389 PFR28_00390 PFR28_00391 PFR28_00392 PFR28_00393
carbon source Betaine (C) -0.4 N.D. -1.1 -0.7 -0.3
carbon source acetate carbon 10 mM -0.2 N.D. -0.4 -1.0 -0.3
carbon source Trisodium citrate 10 mM (C) +0.1 N.D. -0.5 +0.1 -1.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -0.2 N.D. -0.4 +0.2 -1.3
carbon source Trisodium citrate 10 mM (C) -0.1 N.D. -0.5 +0.3 -1.4
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.0 N.D. +0.2 -0.1 -1.7
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.2 N.D. -0.3 -0.3 -0.7
carbon source caffeic (C) 2.5 mM -0.1 N.D. -0.2 -0.0 -1.1
carbon source m-Inositol carbon 10 mM -0.3 N.D. -0.4 -0.3 -0.5
carbon source D,L-Lactate carbon 20 mM -0.2 N.D. -0.8 -0.2 -0.2
carbon source Shikimic Acid carbon 10 mM -0.4 N.D. -0.1 -0.3 -0.7
carbon source L-pyroglutamic carbon 10 mM -0.2 N.D. -0.7 -0.4 -0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -0.2 N.D. -0.3 +0.1 -1.0
carbon source Inosine (C) -0.6 N.D. -0.5 +0.1 -0.4
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM +0.1 N.D. -0.2 +0.0 -1.3
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -0.0 N.D. -0.6 +0.2 -1.0
carbon source L-Phenylalanine 5 mM (C) +0.1 N.D. -0.7 -0.2 -0.5
carbon source Shikimic Acid (C) 10 mM +0.1 N.D. -0.5 -0.2 -0.7
carbon source Glycocyamine 10 mM (C) +0.1 N.D. -0.6 -0.4 -0.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM +0.1 N.D. -0.4 +0.1 -1.0
carbon source D-Galactose (C) 10 mM -0.4 N.D. -0.6 +0.1 -0.3
carbon source octanoate (C) -0.1 N.D. -0.4 +0.2 -0.8
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM -0.1 N.D. -0.3 +0.2 -0.8
carbon source Trisodium citrate 10 mM (C) +0.3 N.D. -0.4 +0.3 -1.2
carbon source caffeic (C) 2.5 mM -0.2 N.D. +0.5 +0.0 -1.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM +0.1 N.D. -0.2 +0.3 -1.0
carbon source L-Lactate (C) 10 mM -0.4 N.D. +0.8 -0.2 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.7 N.D. -0.1 -0.5 -0.0
carbon source Inosine carbon 10 mM +0.3 N.D. +0.2 +0.4 -0.6
carbon source sn-glycero-3-phosphocholine (C) -0.3 N.D. +0.4 +0.5 -0.2
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