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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_00379 and PFR28_00380 are separated by 133 nucleotides
PFR28_00380 and PFR28_00381 are separated by 31 nucleotides
PFR28_00381 and PFR28_00382 are separated by 53 nucleotides
PFR28_00382 and PFR28_00383 are separated by 239 nucleotides
PFR28_00379: PFR28_00379 - Cobalt-zinc-cadmium resistance protein CzcA, at 412,981 to 416,046
_00379
PFR28_00380: PFR28_00380 - hypothetical protein, at 416,180 to 416,869
_00380
PFR28_00381: PFR28_00381 - hypothetical protein, at 416,901 to 417,299
_00381
PFR28_00382: PFR28_00382 - Glycerol-3-phosphate acyltransferase, at 417,353 to 419,854
_00382
PFR28_00383: PFR28_00383 - Major cold shock protein CspA, at 420,094 to 420,303
_00383
Group
Condition
PFR28
_00379
PFR28
_00380
PFR28
_00381
PFR28
_00382
PFR28
_00383
carbon source
Inosine carbon 10 mM
+0.1
-0.4
-0.2
-0.1
-0.4
carbon source
Cytidine (C)
-0.0
-0.2
-0.3
-0.1
-0.4
carbon source
Adenosine (C) 10 mM
-0.0
-0.2
+0.0
-0.1
-0.6
carbon source
Betaine (C) 2.5 mM
-0.1
+0.2
-0.5
-0.2
-0.2
carbon source
L-Valine (C) 10 mM
+0.1
-0.1
-0.2
+0.2
-0.5
carbon source
Betaine (C)
-0.3
-0.5
+0.2
-0.0
+0.2
carbon source
Guanosine (C)
+0.2
+0.3
-0.2
+0.0
-0.8
carbon source
L-Lactate (C) 10 mM
-0.1
+0.5
-0.6
-0.1
-0.2
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.0
-0.3
-0.6
+0.1
+0.3
carbon source
D-Trehalose (C) 5 mM
-0.1
+0.4
-0.4
-0.1
-0.1
carbon source
L-Valine (C) 10 mM
+0.1
+0.1
+0.0
+0.1
-0.7
carbon source
p-Coumaric (C) 2.5 mM
+0.0
+0.1
-0.1
+0.3
-0.5
carbon source
L-Lactate (C) 10 mM
-0.0
-0.1
-0.5
+0.1
+0.3
carbon source
caffeic (C) 2.5 mM
+0.0
-0.4
-0.1
+0.3
-0.0
carbon source
butyrate (C)
-0.2
-0.3
+0.2
+0.2
+0.1
carbon source
propionate carbon 20 mM
+0.1
-0.1
-0.1
-0.2
+0.4
carbon source
Vanillic Acid (C) 2.5 mM
-0.3
-0.0
-0.1
+0.3
+0.2
carbon source
L-pyroglutamic (C) 10 mM
+0.1
-0.4
+0.0
-0.1
+0.4
carbon source
L-Carnitine (C) 10 mM
-0.2
+0.0
+0.2
-0.2
+0.3
carbon source
sn-glycero-3-phosphocholine (C)
+0.0
-0.3
-0.2
-0.0
+0.6
carbon source
L-Leucine (C) 10 mM
-0.1
-0.1
-0.1
-0.1
+0.6
carbon source
propionate (C) 20 mM
-0.0
+0.1
-0.4
-0.1
+0.6
carbon source
caffeic (C) 2.5 mM
+0.1
-0.1
-0.2
+0.2
+0.3
carbon source
Malonic (C) 10 mM
-0.1
+0.3
+0.3
-0.0
-0.2
carbon source
L-Leucine (C) 10 mM
-0.1
-0.0
-0.1
-0.1
+0.7
carbon source
Azelaic carbon 10 mM
-0.1
-0.2
-0.2
+0.1
+0.8
carbon source
L-Hydroxyproline carbon 10 mM
+0.1
+0.1
-0.1
-0.1
+0.6
carbon source
Uridine (C) 10 mM
-0.2
+0.1
+0.2
+0.1
+0.4
carbon source
Ferulic Acid (C) 2.5 mM
+0.1
-0.0
-0.1
+0.3
+0.4
carbon source
D(+)-Glucuronic carbon 10 mM
-0.1
+0.2
-0.0
+0.0
+0.6
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