Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_00345 and PFR28_00346 are separated by 1 nucleotidesPFR28_00346 and PFR28_00347 are separated by 133 nucleotidesPFR28_00347 and PFR28_00348 are separated by 90 nucleotidesPFR28_00348 and PFR28_00349 are separated by 205 nucleotides PFR28_00345: PFR28_00345 - Inner membrane ABC transporter permease protein YdcU, at 377,018 to 377,965 _00345 PFR28_00346: PFR28_00346 - Spermidine/putrescine import ATP-binding protein PotA, at 377,967 to 379,004 _00346 PFR28_00347: PFR28_00347 - Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein, at 379,138 to 380,289 _00347 PFR28_00348: PFR28_00348 - Gamma-aminobutyraldehyde dehydrogenase, at 380,380 to 381,837 _00348 PFR28_00349: PFR28_00349 - HTH-type transcriptional regulator GltC, at 382,043 to 382,957 _00349
Group Condition PFR28_00345 PFR28_00346 PFR28_00347 PFR28_00348 PFR28_00349
carbon source Guanosine (C) -0.3 -1.1 +0.0 +0.1 -0.2
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.1 -1.1 -0.1 -0.1 +0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.0 -0.3 -0.4 +0.0 -0.5
carbon source butyrate (C) 10 mM -0.2 -0.4 -0.0 -0.0 -0.5
carbon source butyrate (C) 10 mM -0.4 -0.5 +0.1 -0.2 -0.1
carbon source L-Lysine (C) 10 mM -0.2 -0.5 -0.3 +0.1 -0.2
carbon source Betaine (C) 2.5 mM -0.3 -0.3 +0.0 -0.0 -0.4
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM -0.1 -0.3 -0.4 -0.0 -0.1
carbon source Vanillic Acid (C) 2.5 mM -0.1 +0.1 -0.4 -0.1 -0.3
carbon source D-Glucosamine Hydrochloride (C) 10 mM -0.0 +0.1 -0.0 -0.2 -0.7
carbon source sn-glycero-3-phosphocholine (C) +0.1 -0.3 -0.2 +0.1 -0.5
carbon source Glycerol (C) 20 mM -0.0 +0.2 -0.2 -0.1 -0.5
carbon source L-Phenylalanine carbon 5 mM +0.1 -0.8 -0.0 +0.1 +0.0
carbon source Betaine (C) -0.2 +0.0 +0.2 -0.6 +0.1
carbon source Cytidine (C) -0.2 +0.5 -0.1 +0.2 -0.7
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.0 +0.3 -0.3 -0.3 +0.1
carbon source 4-Guanidinobutyric (C) +0.0 +0.2 -0.1 +0.4 -0.6
carbon source L-Lactate (C) 10 mM -0.2 -0.4 +0.0 +0.0 +0.4
carbon source Vanillic Acid (C) 2.5 mM -0.1 +0.2 -0.3 +0.3 -0.2
carbon source Guanosine (C) +0.1 +0.3 +0.0 +0.2 -0.4
carbon source L-Valine (C) 10 mM -0.0 +0.3 +0.3 +0.2 -0.4
carbon source Glycocyamine 20 mM (C) +0.3 +0.3 +0.3 -0.2 -0.2
carbon source L-Phenylalanine carbon 5 mM -0.2 +0.2 -0.1 +0.0 +0.6
carbon source methyl-trans-p-coumarate (C) +0.3 -0.1 +0.2 +0.3 -0.1
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.2 -0.2 -0.0 +0.4 +0.3
carbon source Inosine (C) -0.2 +0.5 -0.0 +0.4 +0.3
carbon source D-Glucose carbon 10 mM +0.0 +0.7 -0.1 +0.1 +0.2
carbon source methyl-trans-p-coumarate (C) +0.0 +0.4 +0.2 +0.0 +0.5
carbon source Azelaic carbon 10 mM +0.1 +0.3 +0.1 +0.1 +0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.3 +0.5 +0.1 +0.0 +0.5
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