Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_00293 and PFR28_00294 are separated by 27 nucleotidesPFR28_00294 and PFR28_00295 are separated by 12 nucleotidesPFR28_00295 and PFR28_00296 overlap by 1 nucleotidesPFR28_00296 and PFR28_00297 are separated by 3 nucleotides PFR28_00293: PFR28_00293 - Nucleoside diphosphate kinase, at 320,425 to 320,850 _00293 PFR28_00294: PFR28_00294 - Dual-specificity RNA methyltransferase RlmN, at 320,878 to 322,026 _00294 PFR28_00295: PFR28_00295 - hypothetical protein, at 322,039 to 322,797 _00295 PFR28_00296: PFR28_00296 - Cytoskeleton protein RodZ, at 322,797 to 323,825 _00296 PFR28_00297: PFR28_00297 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 323,829 to 324,938 _00297
Group Condition PFR28_00293 PFR28_00294 PFR28_00295 PFR28_00296 PFR28_00297
carbon source L-Carnitine 10 mM (C) N.D. -0.0 -0.4 -2.8 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM N.D. -0.3 -0.3 -2.5 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct N.D. -0.7 -0.1 -2.2 N.D.
carbon source Glycocyamine 20 mM (C) N.D. -0.5 -0.3 -2.2 N.D.
carbon source L-tyrosine 5 mM (C) N.D. -0.2 -0.1 -2.6 N.D.
carbon source Trisodium citrate 10 mM (C) N.D. -0.4 -0.3 -2.1 N.D.
carbon source L-Phenylalanine 5 mM (C) N.D. -0.0 -0.2 -2.5 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM N.D. -0.2 -0.2 -2.3 N.D.
carbon source L-tyrosine 5 mM (C) N.D. -0.0 -0.2 -2.4 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM N.D. +0.4 -0.4 -2.3 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM N.D. +0.7 -0.4 -2.5 N.D.
carbon source L-tyrosine 5 mM (C) N.D. +0.2 +0.0 -2.4 N.D.
carbon source L-Lactate (C) 10 mM N.D. -1.7 -0.9 +0.5 N.D.
carbon source L-Carnitine 10 mM (C) N.D. +0.4 -0.4 -2.1 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM N.D. +0.4 -0.2 -2.2 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM N.D. +0.7 -0.3 -2.3 N.D.
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM N.D. +0.2 +0.8 -2.4 N.D.
carbon source D,L-Malic Acid (C) N.D. -1.0 +0.2 +1.4 N.D.
carbon source octanoate (C) 10 mM N.D. -0.2 -0.2 +2.3 N.D.
carbon source methyl-trans-p-coumarate (C) N.D. +0.4 -0.4 +2.0 N.D.
carbon source Fumarate (C) 20 mM N.D. +0.0 -0.2 +2.4 N.D.
carbon source methyl-trans-p-coumarate (C) N.D. +0.7 -0.4 +2.3 N.D.
carbon source octanoate (C) N.D. +0.2 +0.2 +2.3 N.D.
carbon source octanoate (C) 10 mM N.D. +0.0 -0.2 +2.9 N.D.
carbon source methyl-trans-p-coumarate (C) N.D. +1.0 -0.1 +1.9 N.D.
carbon source octanoate (C) N.D. -0.1 +0.3 +2.6 N.D.
carbon source octanoate (C) N.D. +0.6 +0.1 +2.5 N.D.
carbon source Inosine carbon 10 mM N.D. -0.8 +0.2 +4.7 N.D.
carbon source Inosine carbon 10 mM N.D. +0.2 +0.0 +5.2 N.D.
carbon source Inosine carbon 10 mM N.D. +0.6 +0.0 +5.0 N.D.
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