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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_00265 and PFR28_00266 overlap by 17 nucleotides
PFR28_00266 and PFR28_00267 are separated by 216 nucleotides
PFR28_00267 and PFR28_00268 are separated by 1 nucleotides
PFR28_00268 and PFR28_00269 are separated by 77 nucleotides
PFR28_00265: PFR28_00265 - Pesticin receptor, at 293,534 to 295,903
_00265
PFR28_00266: PFR28_00266 - hypothetical protein, at 295,887 to 296,972
_00266
PFR28_00267: PFR28_00267 - Protein rof, at 297,189 to 297,455
_00267
PFR28_00268: PFR28_00268 - hypothetical protein, at 297,457 to 297,717
_00268
PFR28_00269: PFR28_00269 - 4-hydroxy-tetrahydrodipicolinate synthase, at 297,795 to 298,682
_00269
Group
Condition
PFR28
_00265
PFR28
_00266
PFR28
_00267
PFR28
_00268
PFR28
_00269
carbon source
L-Lysine (C) 10 mM
-0.1
+0.1
-0.8
-1.2
-0.5
carbon source
D,L-Malic Acid (C) 10 mM
+0.0
-0.1
-1.7
-0.1
-0.4
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.1
-0.1
-1.4
-0.3
-0.3
carbon source
sn-glycero-3-phosphocholine (C)
-0.2
+0.2
-1.4
-0.1
-0.2
carbon source
D-(+)-Galactosamine (C) 10 mM
+0.1
-0.2
-0.7
-0.3
-0.4
carbon source
L-Malic (C) 10 mM
-0.0
-0.3
-0.4
-0.6
-0.1
carbon source
L-tyrosine (C) 10 mM
+0.0
-0.3
-0.9
-0.2
+0.0
carbon source
D-(+)-Galactosamine (C) 10 mM
+0.2
-0.2
-1.0
-0.1
-0.1
carbon source
butyrate (C) 10 mM
+0.2
-0.1
-0.4
-0.8
-0.1
carbon source
Guanosine (C)
-0.3
-0.1
-1.1
+0.3
+0.1
carbon source
Betaine (C) 2.5 mM
+0.2
-0.3
-0.2
-0.7
-0.1
carbon source
Choline (C) 10 mM
+0.1
-0.1
-1.2
-0.0
+0.2
carbon source
butyrate (C)
-0.1
-0.2
-0.7
+0.2
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.2
+0.2
-0.9
-0.0
+0.2
carbon source
p-Coumaric (C)
+0.1
-0.1
-0.8
-0.1
+0.3
carbon source
Cytidine (C)
-0.4
+0.3
-0.5
+0.1
-0.2
carbon source
butyrate (C)
-0.1
+0.4
-1.1
+0.1
+0.2
carbon source
D-Ribose (C) 10 mM
+0.1
-0.1
-0.5
-0.4
+0.3
carbon source
butyrate (C)
-0.0
-0.0
-0.8
+0.4
+0.1
carbon source
L-Lysine (C) 10 mM
+0.1
-0.2
+0.6
-0.6
-0.1
carbon source
Shikimic Acid (C) 10 mM
+0.2
+0.4
-0.8
+0.1
-0.0
carbon source
Guanosine (C)
-0.3
+0.2
-0.6
+0.5
+0.1
carbon source
D-Glucose carbon 10 mM
-0.2
-0.1
+0.7
-0.4
-0.2
carbon source
Inosine (C)
-0.1
-0.0
-0.7
+0.4
+0.2
carbon source
4-Acetoxy-3-methoxycinnamic (C)
-0.2
-0.0
-0.4
+0.5
+0.3
carbon source
Betaine (C)
-0.1
+0.4
-0.8
+0.4
+0.4
carbon source
Inosine carbon 10 mM
-0.3
+0.2
+0.8
+0.3
-0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.2
+0.2
+0.7
+0.1
-0.2
carbon source
methyl ferulate (C)
+0.2
+0.2
-0.2
+0.5
+0.4
carbon source
methyl ferulate (C)
-0.0
+0.2
+0.6
+0.4
+0.2
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PFR28_00267
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