Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_00007 and PFR28_00008 overlap by 4 nucleotidesPFR28_00008 and PFR28_00009 are separated by 130 nucleotidesPFR28_00009 and PFR28_00010 overlap by 4 nucleotidesPFR28_00010 and PFR28_00011 are separated by 20 nucleotides PFR28_00007: PFR28_00007 - RecBCD enzyme subunit RecB, at 9,333 to 13,022 _00007 PFR28_00008: PFR28_00008 - RecBCD enzyme subunit RecD, at 13,019 to 15,115 _00008 PFR28_00009: PFR28_00009 - hypothetical protein, at 15,246 to 15,821 _00009 PFR28_00010: PFR28_00010 - Diguanylate cyclase DgcN, at 15,818 to 17,068 _00010 PFR28_00011: PFR28_00011 - Peptidoglycan-associated lipoprotein, at 17,089 to 17,592 _00011
Group Condition PFR28_00007 PFR28_00008 PFR28_00009 PFR28_00010 PFR28_00011
carbon source L-Hydroxyproline (C) 10 mM -2.7 N.D. -0.3 +0.1 -0.3
carbon source Guanosine (C) -2.3 N.D. -0.1 -0.4 -0.2
carbon source L-Carnitine (C) 10 mM -2.0 N.D. +0.0 -0.4 -0.3
carbon source Glycerol (C) 20 mM -0.7 N.D. -0.1 -0.5 -0.7
carbon source acetate (C) 30 mM -0.5 N.D. -0.6 -0.3 -0.6
carbon source Glycerol (C) 20 mM -0.8 N.D. +0.0 -0.5 -0.6
carbon source p-Coumaric (C) -0.8 N.D. +0.2 -0.5 -0.8
carbon source Guanosine (C) -1.0 N.D. +0.5 -0.4 -0.8
carbon source sn-glycero-3-phosphocholine (C) -0.3 N.D. -0.0 -1.0 -0.4
carbon source Vanillic Acid (C) 2.5 mM -1.4 N.D. -0.1 -0.1 -0.0
carbon source Cytidine (C) -1.1 N.D. +0.1 -0.4 -0.3
carbon source Choline chloride (C) -1.2 N.D. +0.4 -0.4 -0.5
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -1.3 N.D. +0.1 +0.2 -0.5
carbon source propionate (C) 20 mM -0.3 N.D. +0.1 -0.8 -0.4
carbon source L-Phenylalanine carbon 5 mM -1.2 N.D. -0.2 -0.2 +0.3
carbon source L-Carnitine (C) -0.9 N.D. +0.3 +0.1 -0.7
carbon source octanoate (C) -0.5 N.D. +0.4 -0.4 -0.4
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.7 N.D. -0.2 -0.4 +0.5
carbon source Vanillic Acid (C) 2.5 mM -1.0 N.D. -0.1 -0.3 +0.6
carbon source Xanthosine (C) -0.5 N.D. +0.6 -0.3 -0.4
carbon source Choline chloride (C) -0.3 N.D. +0.6 -0.4 -0.4
carbon source L-Phenylalanine 5 mM (C) +0.6 N.D. -0.4 -0.1 -0.4
carbon source D-Glucosamine Hydrochloride carbon 10 mM +0.7 N.D. -0.6 +0.1 -0.2
carbon source L-Carnitine 10 mM (C) +0.9 N.D. -0.3 -0.1 -0.3
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM -1.1 N.D. +0.2 +0.4 +1.0
stress D-Glucose (C); with Chloride 200 mM +0.7 N.D. +0.7 -0.2 -0.4
carbon source p-Coumaric (C) 2.5 mM -0.5 N.D. +0.5 +0.5 +0.6
carbon source NAG (C) 10 mM +0.6 N.D. +0.7 -0.1 +0.2
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM +0.8 N.D. +0.1 +0.1 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.8 N.D. +0.2 +0.4 +0.4
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