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Gene
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Cofit
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS11110 and PFLU_RS11115 are separated by 304 nucleotides
PFLU_RS11115 and PFLU_RS31555 are separated by 413 nucleotides
PFLU_RS31555 and PFLU_RS11120 are separated by 303 nucleotides
PFLU_RS11120 and PFLU_RS11125 are separated by 267 nucleotides
PFLU_RS11110: PFLU_RS11110 - DUF1349 domain-containing protein, at 2,449,885 to 2,450,511
_RS11110
PFLU_RS11115: PFLU_RS11115 - methyl-accepting chemotaxis protein, at 2,450,816 to 2,452,438
_RS11115
PFLU_RS31555: PFLU_RS31555 - 3-hydroxyacyl-CoA dehydrogenase, at 2,452,852 to 2,452,962
_RS31555
PFLU_RS11120: PFLU_RS11120 - NUDIX hydrolase, at 2,453,266 to 2,453,712
_RS11120
PFLU_RS11125: PFLU_RS11125 - GABA permease, at 2,453,980 to 2,455,389
_RS11125
Group
Condition
PFLU
_RS11110
PFLU
_RS11115
PFLU
_RS31555
PFLU
_RS11120
PFLU
_RS11125
carbon source
acetate (C)
+0.2
+0.1
-0.7
-1.6
-0.1
carbon source
D-Glucose (C)
-0.4
-0.1
+0.2
-0.3
-0.3
carbon source
acetate (C)
-0.0
-0.3
+0.1
-1.2
+0.4
carbon source
succinate (C); with MOPS
-0.0
+0.0
-0.7
-0.3
+0.1
carbon source
L-Arabinose (C); with MOPS
+0.0
-0.4
+0.3
-0.5
-0.3
carbon source
L-Arabinose (C)
-0.1
+0.3
-0.0
-0.8
-0.2
carbon source
D-Xylose (C)
-0.1
+0.1
-0.4
-0.4
+0.0
carbon source
Trisodium citrate (C)
-0.0
-0.1
+0.1
-0.6
-0.0
carbon source
D,L-Lactate (C)
-0.1
-0.3
-0.4
+0.2
-0.1
carbon source
acetate (C)
-0.2
+0.2
+0.4
-1.0
+0.0
carbon source
D-Glucose (C); with MOPS
-0.0
+0.1
-0.0
-0.5
+0.0
carbon source
Trisodium citrate (C)
+0.2
-0.5
+0.0
+0.0
-0.2
carbon source
acetate (C)
+0.1
-0.2
-0.3
+0.0
+0.0
carbon source
D-Glucose (C); with MOPS
+0.2
-0.2
-0.1
-0.4
-0.0
carbon source
succinate (C); with MOPS
-0.0
+0.1
-0.2
-0.3
+0.0
carbon source
NAG (C); with MOPS
+0.3
+0.3
-0.8
-0.2
+0.2
carbon source
Trisodium citrate (C)
+0.2
+0.2
-0.2
-0.5
+0.1
carbon source
succinate (C); with MOPS
+0.1
-0.2
+0.3
-0.1
-0.3
carbon source
succinate (C)
-0.0
+0.1
+0.2
-0.4
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.2
-0.1
-0.2
+0.0
carbon source
Trisodium citrate (C); with MOPS
+0.1
-0.1
+0.0
+0.3
-0.2
carbon source
D-Glucose (C)
+0.0
+0.2
-0.1
+0.2
-0.3
carbon source
NAG (C); with MOPS
+0.1
+0.0
+0.2
-0.3
+0.1
carbon source
succinate (C)
+0.1
+0.2
+0.1
-0.1
+0.0
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.1
-0.0
+0.3
-0.2
carbon source
L-Arabinose (C)
-0.1
+0.6
+0.2
-0.3
+0.1
carbon source
L-Arabinose (C)
+0.3
+0.2
+0.1
+0.5
-0.4
carbon source
D-Glucose (C); with MOPS
+0.3
+0.1
-0.2
+0.2
+0.2
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.1
+0.4
+0.1
+0.0
carbon source
NAG (C); with MOPS
+0.3
+0.3
+0.3
-0.5
+0.2
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