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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS31710 and PFLU_RS20225 are separated by 679 nucleotides
PFLU_RS20225 and PFLU_RS30975 are separated by 100 nucleotides
PFLU_RS30975 and PFLU_RS20235 are separated by 186 nucleotides
PFLU_RS20235 and PFLU_RS31310 are separated by 1307 nucleotides
PFLU_RS31710: PFLU_RS31710 - hypothetical protein, at 4,575,436 to 4,575,735
_RS31710
PFLU_RS20225: PFLU_RS20225 - glycoside hydrolase family 19 protein, at 4,576,415 to 4,576,948
_RS20225
PFLU_RS30975: PFLU_RS30975 - acyltransferase, at 4,577,049 to 4,578,965
_RS30975
PFLU_RS20235: PFLU_RS20235 - tail fiber assembly protein, at 4,579,152 to 4,579,496
_RS20235
PFLU_RS31310: PFLU_RS31310 - phage tail protein, at 4,580,804 to 4,581,001
_RS31310
Group
Condition
PFLU
_RS31710
PFLU
_RS20225
PFLU
_RS30975
PFLU
_RS20235
PFLU
_RS31310
carbon source
acetate (C)
-0.6
+0.2
+0.1
-0.1
-3.9
carbon source
acetate (C)
-0.3
-0.3
+0.2
+0.3
-1.4
carbon source
Trisodium citrate (C); with MOPS
-0.0
+0.2
+0.0
-0.0
-1.7
carbon source
L-Arabinose (C); with MOPS
-1.0
+0.1
-0.0
+0.1
-0.1
carbon source
D,L-Lactate (C)
+0.1
-0.1
+0.2
-0.2
-0.5
carbon source
L-Arabinose (C)
-0.1
+0.2
+0.2
+0.1
-0.4
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.2
-0.1
+0.1
-0.4
carbon source
D-Glucose (C)
-0.5
-0.1
-0.1
+0.2
+0.6
carbon source
succinate (C)
+0.5
+0.3
+0.2
+0.3
-1.1
carbon source
NAG (C); with MOPS
-1.1
+0.4
+0.3
+0.1
+0.5
carbon source
succinate (C)
+0.6
+0.2
-0.0
+0.1
-0.5
carbon source
succinate (C)
+0.1
-0.4
+0.3
+0.3
+0.2
carbon source
D,L-Lactate (C)
+0.2
-0.2
+0.4
-0.3
+0.5
carbon source
L-Arabinose (C)
+0.0
+0.7
+0.1
+0.2
-0.3
carbon source
Trisodium citrate (C); with MOPS
+0.7
-0.2
+0.1
+0.0
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.8
+0.2
+0.1
+0.2
-0.5
carbon source
NAG (C)
+0.5
+0.0
+0.1
-0.2
+0.3
carbon source
L-Arabinose (C); with MOPS
+0.5
-0.0
-0.1
-0.1
+0.5
carbon source
L-Arabinose (C)
+1.0
+0.2
+0.3
+0.1
-0.7
carbon source
acetate (C)
-1.0
+0.4
+0.3
+0.2
+1.0
carbon source
D-Glucose (C); with MOPS
+0.2
+0.2
+0.2
-0.1
+0.4
carbon source
acetate (C)
+0.5
+0.1
+0.2
+0.1
+0.2
carbon source
D-Xylose (C)
+0.2
+0.1
+0.1
+0.0
+0.7
carbon source
Trisodium citrate (C)
+0.6
+0.2
-0.0
+0.1
+0.7
carbon source
Trisodium citrate (C)
+0.3
+0.1
+0.0
+0.1
+1.1
carbon source
succinate (C); with MOPS
+0.5
+0.2
+0.0
+0.0
+0.9
carbon source
D-Glucose (C)
+1.0
+0.2
+0.2
+0.2
+0.2
carbon source
succinate (C); with MOPS
+0.7
+0.2
+0.3
+0.2
+0.7
carbon source
NAG (C); with MOPS
+0.7
+0.1
+0.3
+0.0
+0.9
carbon source
D-Glucose (C); with MOPS
+0.5
-0.1
+0.1
+0.2
+1.5
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