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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS18290 and PFLU_RS18295 are separated by 388 nucleotides
PFLU_RS18295 and PFLU_RS30890 are separated by 48 nucleotides
PFLU_RS30890 and PFLU_RS18305 are separated by 273 nucleotides
PFLU_RS18305 and PFLU_RS18310 are separated by 178 nucleotides
PFLU_RS18290: PFLU_RS18290 - TonB-dependent receptor, at 4,149,487 to 4,151,604
_RS18290
PFLU_RS18295: PFLU_RS18295 - helix-turn-helix domain-containing protein, at 4,151,993 to 4,152,619
_RS18295
PFLU_RS30890: PFLU_RS30890 - hypothetical protein, at 4,152,668 to 4,153,186
_RS30890
PFLU_RS18305: PFLU_RS18305 - hypothetical protein, at 4,153,460 to 4,153,729
_RS18305
PFLU_RS18310: PFLU_RS18310 - hypothetical protein, at 4,153,908 to 4,154,657
_RS18310
Group
Condition
PFLU
_RS18290
PFLU
_RS18295
PFLU
_RS30890
PFLU
_RS18305
PFLU
_RS18310
carbon source
succinate (C); with MOPS
+0.0
-0.5
-0.2
-0.4
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.1
-0.4
-0.1
-0.2
-0.1
carbon source
acetate (C)
+0.1
-0.7
+0.4
-0.2
+0.2
carbon source
Trisodium citrate (C)
+0.1
-0.3
-0.0
+0.0
-0.1
carbon source
Trisodium citrate (C)
-0.0
-0.4
+0.0
-0.0
+0.2
carbon source
succinate (C)
+0.0
-0.3
+0.0
+0.2
-0.1
carbon source
acetate (C)
+0.1
-0.2
-0.2
+0.1
+0.1
carbon source
D-Xylose (C)
+0.0
-0.2
+0.2
-0.0
-0.1
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.5
+0.2
+0.1
+0.0
carbon source
L-Arabinose (C); with MOPS
+0.0
-0.6
+0.2
+0.3
-0.1
carbon source
D-Glucose (C)
+0.2
-0.2
+0.0
-0.1
+0.0
carbon source
D,L-Lactate (C)
-0.0
+0.1
+0.1
-0.2
+0.1
carbon source
NAG (C); with MOPS
+0.1
-0.2
+0.3
+0.1
-0.1
carbon source
succinate (C)
+0.0
-0.0
+0.1
+0.1
-0.1
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.3
+0.3
+0.2
-0.0
carbon source
succinate (C); with MOPS
-0.0
-0.1
-0.1
+0.1
+0.2
carbon source
L-Arabinose (C)
+0.1
-0.3
+0.2
+0.0
+0.2
carbon source
D-Glucose (C)
+0.1
-0.1
-0.1
+0.2
+0.1
carbon source
Trisodium citrate (C)
+0.1
-0.2
+0.1
+0.2
+0.0
carbon source
D-Glucose (C); with MOPS
+0.2
-0.3
-0.1
+0.2
+0.2
carbon source
L-Arabinose (C)
+0.1
-0.6
+0.5
+0.3
+0.1
carbon source
D-Glucose (C); with MOPS
+0.2
-0.2
+0.1
+0.1
+0.1
carbon source
acetate (C)
+0.0
-0.1
+0.5
-0.1
+0.1
carbon source
D-Glucose (C)
+0.2
-0.0
+0.2
+0.0
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.0
+0.1
+0.2
+0.2
carbon source
NAG (C); with MOPS
-0.0
+0.3
+0.3
-0.1
+0.0
carbon source
D-Glucose (C); with MOPS
+0.2
-0.1
+0.1
+0.3
+0.1
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.1
-0.0
+0.2
+0.3
carbon source
D-Xylose (C)
+0.1
+0.1
+0.3
+0.1
+0.1
carbon source
L-Arabinose (C)
+0.1
+0.0
+0.4
+0.4
-0.0
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