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Gene
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Cofit
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS01095 and PFLU_RS01100 are separated by 195 nucleotides
PFLU_RS01100 and PFLU_RS30340 overlap by 20 nucleotides
PFLU_RS30340 and PFLU_RS01110 are separated by 318 nucleotides
PFLU_RS01110 and PFLU_RS31375 are separated by 820 nucleotides
PFLU_RS01095: PFLU_RS01095 - ribbon-helix-helix protein, CopG family, at 242,916 to 243,188
_RS01095
PFLU_RS01100: PFLU_RS01100 - recombinase family protein, at 243,384 to 243,950
_RS01100
PFLU_RS30340: PFLU_RS30340 - hypothetical protein, at 243,931 to 244,169
_RS30340
PFLU_RS01110: PFLU_RS01110 - AAA family ATPase, at 244,488 to 245,112
_RS01110
PFLU_RS31375: PFLU_RS31375 - hypothetical protein, at 245,933 to 246,113
_RS31375
Group
Condition
PFLU
_RS01095
PFLU
_RS01100
PFLU
_RS30340
PFLU
_RS01110
PFLU
_RS31375
carbon source
NAG (C); with MOPS
-2.9
+0.3
+0.5
+0.0
+0.2
carbon source
L-Arabinose (C)
-1.3
-0.2
-0.7
+0.6
-0.2
carbon source
NAG (C); with MOPS
-1.9
+0.2
+0.2
-0.1
-0.1
carbon source
acetate (C)
-0.5
-0.0
-0.2
+0.1
-0.9
carbon source
L-Arabinose (C); with MOPS
-1.6
+0.2
+0.4
-0.3
-0.0
carbon source
L-Arabinose (C); with MOPS
-1.1
+0.0
-0.4
+0.1
+0.2
carbon source
NAG (C)
-0.7
-0.1
-0.4
-0.4
+0.3
carbon source
L-Arabinose (C); with MOPS
-1.1
-0.0
+0.1
+0.1
-0.1
carbon source
D-Glucose (C)
-0.8
+0.0
-0.4
-0.1
+0.2
carbon source
succinate (C); with MOPS
-1.2
-0.1
+0.1
+0.0
+0.1
carbon source
D-Glucose (C)
-0.8
-0.0
+0.1
-0.1
-0.0
carbon source
NAG (C)
-0.8
-0.1
+0.0
+0.1
+0.0
carbon source
succinate (C); with MOPS
-0.8
-0.0
+0.5
-0.2
+0.1
carbon source
acetate (C)
-0.4
+0.1
-0.3
-0.0
+0.2
carbon source
acetate (C)
-0.9
-0.1
-0.1
+0.6
+0.1
carbon source
NAG (C); with MOPS
-0.8
+0.1
-0.3
+0.2
+0.5
carbon source
acetate (C)
-0.8
+0.5
-0.3
+0.0
+0.3
carbon source
L-Arabinose (C)
-0.7
-0.2
+0.5
+0.1
+0.1
carbon source
D-Glucose (C); with MOPS
-0.1
-0.4
+0.4
+0.2
-0.2
carbon source
L-Arabinose (C)
-0.5
+0.4
+0.2
+0.1
-0.2
carbon source
Trisodium citrate (C)
-0.4
-0.0
+0.1
+0.3
+0.2
carbon source
succinate (C)
-0.6
+0.1
+0.2
+0.1
+0.4
carbon source
succinate (C); with MOPS
-0.3
+0.0
+0.5
+0.1
-0.1
carbon source
succinate (C)
-0.1
-0.0
+0.8
-0.2
-0.3
carbon source
D-Glucose (C); with MOPS
-0.3
+0.1
+0.5
-0.0
-0.0
carbon source
Trisodium citrate (C)
-0.7
+0.1
+0.7
-0.1
+0.4
carbon source
succinate (C)
-0.2
+0.0
+0.3
+0.6
-0.1
carbon source
D-Glucose (C); with MOPS
-0.4
-0.1
+0.5
+0.4
+0.3
carbon source
D-Glucose (C)
-0.4
+0.3
+0.4
+0.3
+0.4
carbon source
Trisodium citrate (C)
-0.1
+0.1
+0.8
+0.7
+0.2
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