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Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS29885 and PFLU_RS31220 overlap by 71 nucleotides
PFLU_RS31220 and PFLU_RS29890 are separated by 220 nucleotides
PFLU_RS29890 and PFLU_RS29895 are separated by 158 nucleotides
PFLU_RS29895 and PFLU_RS29900 are separated by 247 nucleotides
PFLU_RS29885: PFLU_RS29885 - LysR family transcriptional regulator, at 6,646,195 to 6,647,169
_RS29885
PFLU_RS31220: PFLU_RS31220 - hypothetical protein, at 6,647,099 to 6,647,296
_RS31220
PFLU_RS29890: PFLU_RS29890 - transcriptional regulator HexR, at 6,647,517 to 6,648,383
_RS29890
PFLU_RS29895: PFLU_RS29895 - EAL domain-containing protein, at 6,648,542 to 6,651,418
_RS29895
PFLU_RS29900: PFLU_RS29900 - DNA helicase II, at 6,651,666 to 6,653,849
_RS29900
Group
Condition
PFLU
_RS29885
PFLU
_RS31220
PFLU
_RS29890
PFLU
_RS29895
PFLU
_RS29900
carbon source
D-Glucose (C)
-5.1
N.D.
-0.4
+0.0
-1.2
carbon source
D-Glucose (C)
-4.0
N.D.
-0.4
-0.1
-1.1
carbon source
D-Glucose (C); with MOPS
-3.2
N.D.
-0.9
-0.3
-1.0
carbon source
D-Glucose (C); with MOPS
-3.3
N.D.
-0.8
-0.1
-0.9
carbon source
L-Arabinose (C)
-4.3
N.D.
+0.3
-0.1
-0.9
carbon source
D-Glucose (C); with MOPS
-3.5
N.D.
-0.5
-0.1
-0.9
carbon source
L-Arabinose (C)
-2.8
N.D.
-0.3
-0.3
-1.5
carbon source
D-Glucose (C)
-3.4
N.D.
-0.1
-0.1
-1.3
carbon source
NAG (C); with MOPS
-5.8
N.D.
+2.7
-0.2
-1.4
carbon source
NAG (C); with MOPS
-5.5
N.D.
+3.0
-0.4
-1.3
carbon source
L-Arabinose (C)
-2.7
N.D.
+0.3
-0.3
-1.3
carbon source
NAG (C); with MOPS
-5.8
N.D.
+3.2
-0.4
-1.0
carbon source
NAG (C)
-5.6
N.D.
+2.3
-0.2
-0.3
carbon source
D,L-Lactate (C)
-3.8
N.D.
+0.3
-0.1
-0.2
carbon source
D,L-Lactate (C)
-3.4
N.D.
+0.3
-0.1
-0.3
carbon source
NAG (C)
-5.0
N.D.
+2.2
-0.2
-0.3
carbon source
L-Arabinose (C); with MOPS
-2.1
N.D.
+0.2
+0.0
-1.2
carbon source
L-Arabinose (C); with MOPS
-2.0
N.D.
+0.4
-0.2
-1.1
carbon source
Trisodium citrate (C)
-0.8
N.D.
-0.8
-0.0
-1.1
carbon source
acetate (C)
-2.1
N.D.
+0.8
+0.0
-1.3
carbon source
L-Arabinose (C); with MOPS
-1.6
N.D.
+0.2
-0.1
-1.1
carbon source
Trisodium citrate (C)
-0.8
N.D.
-0.5
-0.0
-1.0
carbon source
Trisodium citrate (C); with MOPS
-0.6
N.D.
-0.4
+0.0
-1.3
carbon source
Trisodium citrate (C)
-0.9
N.D.
-0.3
+0.0
-1.0
carbon source
succinate (C); with MOPS
-0.2
N.D.
-0.2
+0.1
-1.5
carbon source
acetate (C)
-2.1
N.D.
+1.2
-0.1
-0.8
carbon source
succinate (C); with MOPS
-0.4
N.D.
+0.1
+0.1
-1.4
carbon source
acetate (C)
-1.5
N.D.
+0.8
-0.1
-0.5
carbon source
acetate (C)
-1.5
N.D.
+1.0
-0.1
-0.4
carbon source
acetate (C)
-1.2
N.D.
+0.7
-0.0
-0.2
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