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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS28955 and PFLU_RS28960 overlap by 4 nucleotides
PFLU_RS28960 and PFLU_RS28965 are separated by 265 nucleotides
PFLU_RS28965 and PFLU_RS28970 are separated by 348 nucleotides
PFLU_RS28970 and PFLU_RS28975 are separated by 69 nucleotides
PFLU_RS28955: PFLU_RS28955 - TIGR02449 family protein, at 6,438,008 to 6,438,217
_RS28955
PFLU_RS28960: PFLU_RS28960 - cell division protein ZapA, at 6,438,214 to 6,438,531
_RS28960
PFLU_RS28965: PFLU_RS28965 - 5-formyltetrahydrofolate cyclo-ligase, at 6,438,797 to 6,439,426
_RS28965
PFLU_RS28970: PFLU_RS28970 - EVE domain-containing protein, at 6,439,775 to 6,440,224
_RS28970
PFLU_RS28975: PFLU_RS28975 - HlyD family efflux transporter periplasmic adaptor subunit, at 6,440,294 to 6,441,259
_RS28975
Group
Condition
PFLU
_RS28955
PFLU
_RS28960
PFLU
_RS28965
PFLU
_RS28970
PFLU
_RS28975
carbon source
NAG (C); with MOPS
-0.8
-0.7
-4.0
+0.1
-0.0
carbon source
L-Arabinose (C)
-2.3
+0.2
-3.3
-0.1
+0.1
carbon source
acetate (C)
-1.3
-0.0
-3.2
-0.6
-0.1
carbon source
L-Arabinose (C); with MOPS
-1.5
-0.1
-3.6
-0.3
+0.3
carbon source
NAG (C); with MOPS
-0.8
+0.3
-4.1
+0.0
+0.1
carbon source
NAG (C); with MOPS
-0.7
+0.2
-4.2
+0.0
+0.1
carbon source
L-Arabinose (C); with MOPS
-2.0
+0.3
-3.3
+0.3
+0.1
carbon source
L-Arabinose (C)
-2.1
+0.1
-2.3
+0.2
-0.1
carbon source
Trisodium citrate (C)
-0.8
-0.0
-3.5
+0.3
-0.1
carbon source
Trisodium citrate (C)
-0.6
-0.1
-3.4
-0.0
+0.1
carbon source
Trisodium citrate (C); with MOPS
-0.7
-0.2
-3.1
+0.0
-0.0
carbon source
Trisodium citrate (C)
-0.9
+0.5
-3.5
+0.0
+0.2
carbon source
Trisodium citrate (C); with MOPS
-0.6
-0.1
-2.9
-0.1
-0.1
carbon source
D-Glucose (C); with MOPS
-0.4
-0.5
-3.4
+0.4
+0.1
carbon source
L-Arabinose (C)
-2.0
+0.3
-2.3
+0.1
+0.1
carbon source
acetate (C)
-1.5
+0.5
-2.5
-0.3
+0.1
carbon source
acetate (C)
-0.9
+0.5
-3.3
-0.1
+0.2
carbon source
succinate (C)
-0.7
-0.3
-2.8
+0.2
-0.0
carbon source
L-Arabinose (C); with MOPS
-1.7
+0.9
-2.7
+0.1
-0.0
carbon source
D-Glucose (C); with MOPS
-0.5
+0.3
-2.8
-0.2
+0.1
carbon source
succinate (C)
-0.2
-0.1
-3.0
+0.1
+0.1
carbon source
Trisodium citrate (C); with MOPS
-0.6
+0.5
-2.9
+0.2
-0.1
carbon source
succinate (C)
-0.6
-0.0
-2.4
+0.3
+0.0
carbon source
NAG (C)
+0.2
+0.4
-3.3
+0.1
-0.1
carbon source
NAG (C)
+0.1
+0.1
-2.5
-0.0
-0.0
carbon source
D-Glucose (C); with MOPS
-0.5
+0.5
-2.4
+0.2
+0.0
carbon source
succinate (C); with MOPS
-0.4
+0.4
-2.4
+0.4
+0.1
carbon source
succinate (C); with MOPS
-0.5
+0.4
-2.1
+0.3
+0.1
carbon source
D-Glucose (C)
-0.6
+0.5
-1.6
-0.1
+0.1
carbon source
D-Glucose (C)
-0.6
+0.5
-1.6
-0.1
+0.1
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