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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS28505 and PFLU_RS28510 are separated by 272 nucleotides
PFLU_RS28510 and PFLU_RS28515 are separated by 101 nucleotides
PFLU_RS28515 and PFLU_RS28520 are separated by 21 nucleotides
PFLU_RS28520 and PFLU_RS28525 are separated by 240 nucleotides
PFLU_RS28505: PFLU_RS28505 - pantetheine-phosphate adenylyltransferase, at 6,341,579 to 6,342,058
_RS28505
PFLU_RS28510: PFLU_RS28510 - YfhL family 4Fe-4S dicluster ferredoxin, at 6,342,331 to 6,342,582
_RS28510
PFLU_RS28515: PFLU_RS28515 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 6,342,684 to 6,343,496
_RS28515
PFLU_RS28520: PFLU_RS28520 - HDOD domain-containing protein, at 6,343,518 to 6,344,384
_RS28520
PFLU_RS28525: PFLU_RS28525 - class I SAM-dependent rRNA methyltransferase, at 6,344,625 to 6,345,821
_RS28525
Group
Condition
PFLU
_RS28505
PFLU
_RS28510
PFLU
_RS28515
PFLU
_RS28520
PFLU
_RS28525
carbon source
L-Arabinose (C); with MOPS
N.D.
-2.4
-0.1
-0.0
+0.1
carbon source
NAG (C); with MOPS
N.D.
-1.8
-0.2
+0.0
+0.3
carbon source
NAG (C)
N.D.
-1.3
+0.1
+0.0
-0.0
carbon source
succinate (C); with MOPS
N.D.
-0.8
-0.2
-0.1
-0.0
carbon source
L-Arabinose (C)
N.D.
-1.3
+0.0
+0.1
+0.1
carbon source
Trisodium citrate (C); with MOPS
N.D.
-1.0
-0.0
+0.0
+0.1
carbon source
succinate (C)
N.D.
-0.6
+0.1
-0.1
-0.2
carbon source
NAG (C); with MOPS
N.D.
-1.0
-0.1
+0.2
+0.1
carbon source
acetate (C)
N.D.
-0.6
-0.3
+0.0
+0.0
carbon source
Trisodium citrate (C); with MOPS
N.D.
-0.9
-0.0
+0.0
+0.2
carbon source
D-Glucose (C)
N.D.
-0.5
-0.1
-0.0
+0.0
carbon source
NAG (C)
N.D.
-1.1
+0.3
+0.0
+0.3
carbon source
Trisodium citrate (C); with MOPS
N.D.
-0.3
-0.0
-0.1
-0.1
carbon source
acetate (C)
N.D.
-0.7
+0.2
+0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
N.D.
-0.0
-0.1
-0.0
-0.2
carbon source
D-Glucose (C); with MOPS
N.D.
-0.4
-0.2
+0.0
+0.1
carbon source
succinate (C)
N.D.
-0.7
-0.1
+0.1
+0.3
carbon source
acetate (C)
N.D.
-0.6
+0.0
+0.3
-0.0
carbon source
D-Xylose (C)
N.D.
-0.4
-0.0
+0.1
-0.0
carbon source
L-Arabinose (C); with MOPS
N.D.
-0.3
-0.0
-0.0
+0.0
carbon source
Trisodium citrate (C)
N.D.
-0.3
+0.1
+0.0
-0.0
carbon source
L-Arabinose (C)
N.D.
-0.3
-0.1
-0.2
+0.3
carbon source
D-Glucose (C)
N.D.
-0.3
+0.1
-0.1
-0.0
carbon source
D-Xylose (C)
N.D.
+0.1
+0.0
-0.1
-0.2
carbon source
succinate (C); with MOPS
N.D.
-0.2
+0.1
-0.1
+0.3
carbon source
acetate (C)
N.D.
+0.3
+0.0
-0.0
-0.2
carbon source
NAG (C); with MOPS
N.D.
-0.1
-0.0
+0.0
+0.3
carbon source
succinate (C); with MOPS
N.D.
+0.3
+0.0
-0.1
+0.0
carbon source
D-Glucose (C)
N.D.
+0.2
-0.1
+0.1
+0.2
carbon source
acetate (C)
N.D.
+0.5
+0.1
-0.1
+0.5
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