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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS27925 and PFLU_RS27930 are separated by 160 nucleotides
PFLU_RS27930 and PFLU_RS27935 are separated by 87 nucleotides
PFLU_RS27935 and PFLU_RS27940 are separated by 65 nucleotides
PFLU_RS27940 and PFLU_RS27945 are separated by 13 nucleotides
PFLU_RS27925: PFLU_RS27925 - GlxA family transcriptional regulator, at 6,216,340 to 6,217,317
_RS27925
PFLU_RS27930: PFLU_RS27930 - choline ABC transporter substrate-binding protein, at 6,217,478 to 6,218,422
_RS27930
PFLU_RS27935: PFLU_RS27935 - 3-keto-5-aminohexanoate cleavage protein, at 6,218,510 to 6,219,397
_RS27935
PFLU_RS27940: PFLU_RS27940 - L-carnitine dehydrogenase, at 6,219,463 to 6,220,428
_RS27940
PFLU_RS27945: PFLU_RS27945 - 4-hydroxybenzoyl-CoA thioesterase, at 6,220,442 to 6,220,942
_RS27945
Group
Condition
PFLU
_RS27925
PFLU
_RS27930
PFLU
_RS27935
PFLU
_RS27940
PFLU
_RS27945
carbon source
succinate (C)
-1.4
-0.2
+0.1
-0.3
+0.2
carbon source
L-Arabinose (C)
+0.1
-0.3
-0.5
-0.4
-0.1
carbon source
succinate (C)
-0.8
-0.2
+0.3
-0.2
-0.4
carbon source
L-Arabinose (C); with MOPS
-0.3
+0.2
-0.3
+0.0
-0.7
carbon source
NAG (C); with MOPS
-0.8
+0.5
-0.7
-0.1
+0.1
carbon source
acetate (C)
-0.3
-0.4
+0.1
+0.1
-0.3
carbon source
L-Arabinose (C); with MOPS
+0.3
-0.4
-0.1
-0.0
-0.3
carbon source
D-Glucose (C)
-0.8
-0.0
-0.4
+0.1
+0.5
carbon source
NAG (C); with MOPS
+0.5
-0.2
-0.3
-0.0
-0.5
carbon source
acetate (C)
-0.5
+0.1
-0.0
+0.1
-0.2
carbon source
Trisodium citrate (C)
-0.5
+0.3
-0.1
-0.1
-0.1
carbon source
D,L-Lactate (C)
-0.0
+0.0
-0.4
+0.1
-0.1
carbon source
succinate (C)
-0.1
-0.0
-0.3
-0.0
+0.2
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.4
+0.1
+0.1
-0.6
carbon source
L-Arabinose (C)
-0.6
-0.7
+0.5
+0.1
+0.5
carbon source
D-Glucose (C); with MOPS
-0.3
+0.1
-0.4
+0.2
+0.4
carbon source
succinate (C); with MOPS
-0.6
+0.1
+0.3
+0.1
+0.2
carbon source
NAG (C); with MOPS
+0.7
-0.2
-0.2
+0.0
-0.2
carbon source
Trisodium citrate (C)
-0.6
+0.0
+0.4
+0.1
+0.2
carbon source
acetate (C)
+0.3
-0.1
+0.1
+0.2
-0.4
carbon source
Trisodium citrate (C)
+0.1
+0.2
+0.3
-0.3
-0.0
carbon source
succinate (C); with MOPS
-0.1
+0.1
+0.1
+0.1
+0.2
carbon source
D-Glucose (C)
+0.1
+0.0
+0.6
-0.2
+0.0
carbon source
Trisodium citrate (C); with MOPS
-0.4
+0.2
+0.6
+0.1
+0.0
carbon source
acetate (C)
-0.2
-0.3
+0.4
+0.2
+0.6
carbon source
succinate (C); with MOPS
+0.0
+0.4
+0.1
-0.0
+0.2
carbon source
D-Glucose (C)
+0.2
+0.2
+0.2
+0.1
+0.1
carbon source
D-Xylose (C)
+0.5
+0.2
-0.0
+0.0
+0.1
carbon source
D-Glucose (C); with MOPS
+0.7
+0.4
+0.5
-0.1
-0.2
carbon source
D-Glucose (C); with MOPS
+0.9
-0.0
+0.6
+0.2
+0.0
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