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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS27690 and PFLU_RS27695 are separated by 207 nucleotides
PFLU_RS27695 and PFLU_RS27700 overlap by 4 nucleotides
PFLU_RS27700 and PFLU_RS31830 are separated by 19 nucleotides
PFLU_RS31830 and PFLU_RS27705 are separated by 54 nucleotides
PFLU_RS27690: PFLU_RS27690 - response regulator, at 6,163,573 to 6,164,019
_RS27690
PFLU_RS27695: PFLU_RS27695 - CBS domain-containing protein, at 6,164,227 to 6,166,200
_RS27695
PFLU_RS27700: PFLU_RS27700 - 3'-5' exonuclease, at 6,166,197 to 6,166,904
_RS27700
PFLU_RS31830: PFLU_RS31830 - hypothetical protein, at 6,166,924 to 6,167,106
_RS31830
PFLU_RS27705: PFLU_RS27705 - RNA polymerase sigma factor, at 6,167,161 to 6,167,679
_RS27705
Group
Condition
PFLU
_RS27690
PFLU
_RS27695
PFLU
_RS27700
PFLU
_RS31830
PFLU
_RS27705
carbon source
acetate (C)
N.D.
+0.4
-0.1
-3.5
-0.3
carbon source
L-Arabinose (C); with MOPS
N.D.
+0.0
-0.5
-1.7
+0.2
carbon source
acetate (C)
N.D.
+0.2
+0.2
-2.2
-0.1
carbon source
NAG (C)
N.D.
+0.0
-0.3
-1.0
-0.1
carbon source
NAG (C); with MOPS
N.D.
+0.4
-1.6
-0.2
+0.1
carbon source
acetate (C)
N.D.
+0.1
-0.1
-1.2
+0.0
carbon source
L-Arabinose (C)
N.D.
+0.1
-0.5
+0.1
-0.7
carbon source
acetate (C)
N.D.
+0.1
-0.3
+0.2
-1.0
carbon source
acetate (C)
N.D.
+0.2
-1.1
-0.1
+0.0
carbon source
succinate (C)
N.D.
+0.2
-0.0
-0.9
-0.2
carbon source
succinate (C); with MOPS
N.D.
+0.2
+0.0
-1.1
+0.1
carbon source
D-Glucose (C)
N.D.
+0.4
+0.1
-1.3
+0.1
carbon source
NAG (C); with MOPS
N.D.
+0.6
-1.4
+0.6
-0.3
carbon source
L-Arabinose (C); with MOPS
N.D.
+0.2
+0.3
-1.1
+0.2
carbon source
NAG (C)
N.D.
+0.2
-0.3
-0.1
-0.2
carbon source
NAG (C); with MOPS
N.D.
+0.6
-1.2
+0.2
-0.1
carbon source
D,L-Lactate (C)
N.D.
+0.3
-0.4
-0.4
+0.1
carbon source
D-Glucose (C); with MOPS
N.D.
+0.2
+0.1
-0.3
-0.3
carbon source
D,L-Lactate (C)
N.D.
+0.1
-0.3
+0.2
-0.2
carbon source
D-Glucose (C); with MOPS
N.D.
+0.3
+0.3
-0.6
-0.0
carbon source
L-Arabinose (C)
N.D.
-0.0
-0.3
+0.4
+0.1
carbon source
D-Glucose (C); with MOPS
N.D.
+0.3
+0.2
-0.5
+0.2
carbon source
succinate (C)
N.D.
+0.3
+0.4
-0.4
-0.0
carbon source
D-Glucose (C)
N.D.
+0.4
-0.3
+0.2
+0.1
carbon source
L-Arabinose (C)
N.D.
-0.3
+0.4
+0.3
+0.1
carbon source
Trisodium citrate (C); with MOPS
N.D.
+0.5
+0.4
-0.2
-0.2
carbon source
D-Glucose (C)
N.D.
+0.1
+0.5
+0.1
-0.1
carbon source
Trisodium citrate (C); with MOPS
N.D.
+0.1
+0.1
+0.7
-0.0
carbon source
Trisodium citrate (C)
N.D.
+0.4
+0.1
+0.6
-0.1
carbon source
Trisodium citrate (C); with MOPS
N.D.
+0.3
+0.4
+0.8
-0.1
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