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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS31135 and PFLU_RS26060 are separated by 114 nucleotides
PFLU_RS26060 and PFLU_RS26065 overlap by 4 nucleotides
PFLU_RS26065 and PFLU_RS26070 are separated by 1 nucleotides
PFLU_RS26070 and PFLU_RS26075 are separated by 249 nucleotides
PFLU_RS31135: PFLU_RS31135 - hypothetical protein, at 5,821,360 to 5,821,713
_RS31135
PFLU_RS26060: PFLU_RS26060 - recombinase family protein, at 5,821,828 to 5,823,393
_RS26060
PFLU_RS26065: PFLU_RS26065 - chromosome partitioning protein ParB, at 5,823,390 to 5,824,304
_RS26065
PFLU_RS26070: PFLU_RS26070 - chromosome partitioning protein, at 5,824,306 to 5,825,211
_RS26070
PFLU_RS26075: PFLU_RS26075 - IS66 family insertion sequence hypothetical protein, at 5,825,461 to 5,825,802
_RS26075
Group
Condition
PFLU
_RS31135
PFLU
_RS26060
PFLU
_RS26065
PFLU
_RS26070
PFLU
_RS26075
carbon source
acetate (C)
-0.1
-0.1
-0.2
+0.0
-0.5
carbon source
acetate (C)
-0.4
-0.1
+0.0
+0.1
-0.1
carbon source
D-Glucose (C)
-0.2
+0.0
-0.1
+0.1
-0.3
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.1
-0.4
-0.3
+0.2
carbon source
D-Glucose (C); with MOPS
-0.0
-0.0
-0.0
-0.1
-0.2
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.0
+0.1
-0.2
+0.0
carbon source
L-Arabinose (C)
+0.2
-0.2
-0.2
+0.3
-0.3
carbon source
D,L-Lactate (C)
-0.1
-0.1
-0.1
+0.0
+0.2
carbon source
acetate (C)
-0.2
-0.0
-0.0
+0.0
+0.1
carbon source
D-Glucose (C)
+0.0
-0.1
+0.1
-0.2
+0.1
carbon source
D,L-Lactate (C)
-0.1
+0.0
-0.1
+0.1
+0.1
carbon source
L-Arabinose (C)
+0.1
+0.1
+0.0
+0.2
-0.3
carbon source
D-Xylose (C)
-0.2
+0.1
+0.0
+0.0
+0.2
carbon source
succinate (C)
+0.0
-0.1
-0.1
-0.0
+0.3
carbon source
succinate (C); with MOPS
-0.0
-0.1
+0.1
+0.1
-0.0
carbon source
succinate (C)
-0.1
-0.1
+0.1
+0.2
+0.1
carbon source
NAG (C)
+0.2
+0.0
+0.1
-0.0
-0.1
carbon source
NAG (C)
+0.1
+0.1
-0.1
+0.0
+0.0
carbon source
Trisodium citrate (C)
+0.0
+0.1
-0.2
+0.1
+0.3
carbon source
acetate (C)
+0.1
+0.0
-0.0
+0.0
+0.1
carbon source
succinate (C); with MOPS
+0.1
+0.0
+0.0
+0.2
-0.0
carbon source
D-Glucose (C); with MOPS
+0.1
-0.0
+0.0
+0.4
+0.0
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.0
-0.1
+0.2
+0.3
carbon source
NAG (C); with MOPS
-0.1
-0.1
+0.2
+0.4
+0.1
carbon source
NAG (C); with MOPS
+0.3
+0.1
+0.0
+0.3
-0.1
carbon source
L-Arabinose (C); with MOPS
-0.0
-0.1
-0.1
+0.1
+0.7
carbon source
acetate (C)
-0.2
+0.2
+0.2
+0.0
+0.5
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.1
+0.1
+0.2
+0.3
carbon source
L-Arabinose (C)
+0.2
+0.1
-0.0
+0.2
+0.3
carbon source
D-Glucose (C)
+0.0
+0.0
+0.1
+0.4
+0.5
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