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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS25310 and PFLU_RS25315 are separated by 2 nucleotides
PFLU_RS25315 and PFLU_RS25320 are separated by 16 nucleotides
PFLU_RS25320 and PFLU_RS25325 overlap by 116 nucleotides
PFLU_RS25325 and PFLU_RS25330 are separated by 79 nucleotides
PFLU_RS25310: PFLU_RS25310 - GTP cyclohydrolase I FolE, at 5,656,088 to 5,656,648
_RS25310
PFLU_RS25315: PFLU_RS25315 - dihydroneopterin triphosphate 2'-epimerase, at 5,656,651 to 5,657,028
_RS25315
PFLU_RS25320: PFLU_RS25320 - DUF1244 domain-containing protein, at 5,657,045 to 5,657,341
_RS25320
PFLU_RS25325: PFLU_RS25325 - HopJ type III effector protein, at 5,657,226 to 5,657,675
_RS25325
PFLU_RS25330: PFLU_RS25330 - thioredoxin-disulfide reductase, at 5,657,755 to 5,658,717
_RS25330
Group
Condition
PFLU
_RS25310
PFLU
_RS25315
PFLU
_RS25320
PFLU
_RS25325
PFLU
_RS25330
carbon source
NAG (C)
+0.2
-2.3
-0.3
-0.3
N.D.
carbon source
NAG (C)
+0.0
-2.6
+0.1
-0.2
N.D.
carbon source
NAG (C); with MOPS
-0.0
-2.4
+0.2
-0.3
N.D.
carbon source
NAG (C); with MOPS
+0.2
-2.6
+0.2
-0.3
N.D.
carbon source
NAG (C); with MOPS
-0.3
-1.9
+0.0
-0.2
N.D.
carbon source
L-Arabinose (C)
-0.1
-0.4
-0.8
-0.1
N.D.
carbon source
acetate (C)
+0.1
+0.0
-0.9
-0.6
N.D.
carbon source
succinate (C); with MOPS
-0.2
-0.0
-0.5
-0.3
N.D.
carbon source
Trisodium citrate (C)
-0.1
-0.0
-0.7
-0.0
N.D.
carbon source
D-Glucose (C); with MOPS
+0.1
-0.1
-0.1
-0.8
N.D.
carbon source
Trisodium citrate (C); with MOPS
+0.2
-0.2
-0.2
-0.6
N.D.
carbon source
succinate (C)
-0.2
-0.2
-0.5
+0.2
N.D.
carbon source
D,L-Lactate (C)
-0.1
-0.3
-0.2
-0.1
N.D.
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.2
-0.5
-0.2
N.D.
carbon source
D,L-Lactate (C)
+0.0
+0.2
-0.2
-0.5
N.D.
carbon source
D-Xylose (C)
+0.2
-0.3
-0.2
-0.0
N.D.
carbon source
acetate (C)
+0.1
-0.3
-0.3
+0.2
N.D.
carbon source
D-Glucose (C)
+0.1
-0.4
+0.4
-0.2
N.D.
carbon source
succinate (C); with MOPS
-0.0
+0.1
+0.2
-0.5
N.D.
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.4
-0.4
-0.1
N.D.
carbon source
acetate (C)
-0.1
+0.3
-0.2
-0.1
N.D.
carbon source
L-Arabinose (C)
+0.2
-0.1
-0.2
+0.2
N.D.
carbon source
D-Glucose (C)
+0.2
-0.4
+0.3
-0.1
N.D.
carbon source
D-Xylose (C)
+0.0
-0.0
+0.3
-0.2
N.D.
carbon source
L-Arabinose (C)
+0.2
-0.1
+0.3
-0.2
N.D.
carbon source
succinate (C)
+0.2
+0.1
+0.2
-0.1
N.D.
carbon source
Trisodium citrate (C)
-0.1
+0.0
+0.6
+0.1
N.D.
carbon source
Trisodium citrate (C)
+0.1
+0.4
+0.0
+0.2
N.D.
carbon source
succinate (C); with MOPS
+0.1
+0.2
+0.1
+0.5
N.D.
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.2
+0.3
+0.3
N.D.
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