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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS25085 and PFLU_RS25090 are separated by 147 nucleotides
PFLU_RS25090 and PFLU_RS25095 overlap by 1 nucleotides
PFLU_RS25095 and PFLU_RS25100 are separated by 21 nucleotides
PFLU_RS25100 and PFLU_RS25105 overlap by 1 nucleotides
PFLU_RS25085: PFLU_RS25085 - response regulator, at 5,609,864 to 5,610,526
_RS25085
PFLU_RS25090: PFLU_RS25090 - PepSY domain-containing protein, at 5,610,674 to 5,610,940
_RS25090
PFLU_RS25095: PFLU_RS25095 - cytochrome b561, at 5,610,940 to 5,611,485
_RS25095
PFLU_RS25100: PFLU_RS25100 - exo-alpha-sialidase, at 5,611,507 to 5,612,775
_RS25100
PFLU_RS25105: PFLU_RS25105 - hypothetical protein, at 5,612,775 to 5,613,386
_RS25105
Group
Condition
PFLU
_RS25085
PFLU
_RS25090
PFLU
_RS25095
PFLU
_RS25100
PFLU
_RS25105
carbon source
acetate (C)
-0.1
-0.4
-0.2
-0.1
+0.1
carbon source
D-Xylose (C)
-0.1
-0.3
-0.2
+0.1
-0.0
carbon source
D-Glucose (C)
+0.1
-0.2
+0.1
+0.0
-0.4
carbon source
Trisodium citrate (C); with MOPS
-0.1
-0.6
+0.1
+0.1
+0.2
carbon source
acetate (C)
-0.0
-0.3
+0.4
-0.2
-0.1
carbon source
NAG (C); with MOPS
-0.3
-0.1
+0.2
-0.1
+0.1
carbon source
succinate (C)
+0.0
-0.1
+0.0
+0.2
-0.3
carbon source
succinate (C); with MOPS
-0.2
-0.3
+0.3
+0.2
+0.1
carbon source
L-Arabinose (C)
+0.1
+0.1
+0.3
-0.2
-0.2
carbon source
NAG (C); with MOPS
-0.1
+0.1
+0.5
+0.1
-0.4
carbon source
Trisodium citrate (C); with MOPS
-0.1
+0.2
+0.1
-0.1
+0.0
carbon source
Trisodium citrate (C)
-0.2
+0.4
+0.0
+0.2
-0.0
carbon source
D,L-Lactate (C)
+0.1
+0.0
+0.3
-0.1
+0.1
carbon source
succinate (C); with MOPS
-0.1
-0.0
+0.3
+0.1
+0.2
carbon source
acetate (C)
+0.2
-0.3
+0.0
+0.1
+0.4
carbon source
D-Glucose (C); with MOPS
+0.1
+0.0
+0.2
+0.1
+0.2
carbon source
Trisodium citrate (C)
+0.3
+0.2
+0.1
-0.1
+0.0
carbon source
NAG (C)
+0.2
+0.0
-0.0
+0.0
+0.3
carbon source
acetate (C)
-0.1
+0.2
-0.2
+0.3
+0.4
carbon source
NAG (C); with MOPS
+0.0
+0.5
-0.2
+0.3
-0.1
carbon source
L-Arabinose (C)
+0.1
+0.7
+0.2
-0.1
-0.3
carbon source
D-Glucose (C)
+0.1
+0.5
+0.1
-0.0
-0.1
carbon source
succinate (C); with MOPS
+0.1
+0.1
+0.4
+0.2
-0.2
carbon source
L-Arabinose (C); with MOPS
+0.1
-0.1
+0.6
+0.1
+0.1
carbon source
D-Glucose (C); with MOPS
+0.4
+0.1
-0.0
+0.3
-0.1
carbon source
L-Arabinose (C)
-0.1
+0.4
+0.1
+0.1
+0.3
carbon source
succinate (C)
+0.1
+0.3
+0.3
+0.1
+0.0
carbon source
succinate (C)
+0.3
+0.4
+0.1
+0.0
+0.0
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.3
+0.3
+0.1
+0.1
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.2
+0.2
+0.3
+0.2
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