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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS24895 and PFLU_RS24900 are separated by 43 nucleotides
PFLU_RS24900 and PFLU_RS24905 overlap by 4 nucleotides
PFLU_RS24905 and PFLU_RS24910 are separated by 108 nucleotides
PFLU_RS24910 and PFLU_RS24915 are separated by 165 nucleotides
PFLU_RS24895: PFLU_RS24895 - preprotein translocase subunit YajC, at 5,574,438 to 5,574,776
_RS24895
PFLU_RS24900: PFLU_RS24900 - tRNA guanosine(34) transglycosylase Tgt, at 5,574,820 to 5,575,944
_RS24900
PFLU_RS24905: PFLU_RS24905 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 5,575,941 to 5,576,990
_RS24905
PFLU_RS24910: PFLU_RS24910 - tRNA-Leu, at 5,577,099 to 5,577,183
_RS24910
PFLU_RS24915: PFLU_RS24915 - tyrosine-type recombinase/integrase, at 5,577,349 to 5,578,590
_RS24915
Group
Condition
PFLU
_RS24895
PFLU
_RS24900
PFLU
_RS24905
PFLU
_RS24910
PFLU
_RS24915
carbon source
NAG (C)
-2.9
-1.9
-0.2
N.D.
+0.0
carbon source
NAG (C)
-2.0
-1.1
-0.2
N.D.
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.9
-0.9
-1.0
N.D.
+0.1
carbon source
NAG (C); with MOPS
-1.9
-0.4
-0.4
N.D.
-0.0
carbon source
NAG (C); with MOPS
-1.9
-0.3
-0.2
N.D.
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.8
-0.2
-1.2
N.D.
-0.1
carbon source
D-Glucose (C)
-2.0
-0.3
+0.0
N.D.
+0.0
carbon source
L-Arabinose (C)
+0.1
-0.9
-1.5
N.D.
+0.1
carbon source
D-Glucose (C)
-1.9
-0.4
+0.0
N.D.
+0.2
carbon source
acetate (C)
-1.6
-0.4
-0.1
N.D.
+0.1
carbon source
Trisodium citrate (C)
-1.4
-0.7
-0.1
N.D.
+0.2
carbon source
acetate (C)
-1.6
-0.3
-0.2
N.D.
+0.0
carbon source
L-Arabinose (C)
+0.6
-0.4
-2.2
N.D.
+0.2
carbon source
acetate (C)
-1.5
-0.6
+0.3
N.D.
+0.1
carbon source
succinate (C); with MOPS
-1.8
-0.1
+0.2
N.D.
-0.0
carbon source
D-Glucose (C)
-1.3
-0.3
-0.2
N.D.
+0.1
carbon source
D-Glucose (C); with MOPS
-1.2
-0.3
+0.2
N.D.
-0.0
carbon source
D,L-Lactate (C)
-0.8
-0.5
-0.0
N.D.
+0.0
carbon source
D,L-Lactate (C)
-0.9
-0.1
-0.2
N.D.
-0.0
carbon source
acetate (C)
-0.8
-0.4
-0.0
N.D.
+0.1
carbon source
succinate (C)
-0.5
-0.5
-0.2
N.D.
+0.1
carbon source
D-Xylose (C)
-1.4
+0.3
-0.0
N.D.
+0.0
carbon source
L-Arabinose (C)
+0.8
-0.4
-1.4
N.D.
+0.1
carbon source
NAG (C); with MOPS
-0.3
-0.3
-0.2
N.D.
+0.1
carbon source
Trisodium citrate (C); with MOPS
-1.0
+0.3
+0.1
N.D.
-0.0
carbon source
Trisodium citrate (C); with MOPS
-0.6
-0.3
+0.1
N.D.
+0.2
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.3
-0.6
N.D.
+0.1
carbon source
D-Glucose (C); with MOPS
+0.2
-0.5
+0.1
N.D.
+0.2
carbon source
Trisodium citrate (C); with MOPS
+0.9
-0.5
+0.1
N.D.
+0.1
carbon source
succinate (C); with MOPS
+0.5
+0.3
+0.2
N.D.
+0.2
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