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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS24700 and PFLU_RS24705 are separated by 180 nucleotides
PFLU_RS24705 and PFLU_RS24710 are separated by 71 nucleotides
PFLU_RS24710 and PFLU_RS24715 are separated by 118 nucleotides
PFLU_RS24715 and PFLU_RS24720 are separated by 239 nucleotides
PFLU_RS24700: PFLU_RS24700 - phosphoenolpyruvate--protein phosphotransferase, at 5,532,139 to 5,534,655
_RS24700
PFLU_RS24705: PFLU_RS24705 - carbohydrate porin, at 5,534,836 to 5,536,056
_RS24705
PFLU_RS24710: PFLU_RS24710 - alpha,alpha-phosphotrehalase, at 5,536,128 to 5,537,774
_RS24710
PFLU_RS24715: PFLU_RS24715 - PTS system trehalose-specific EIIBC component, at 5,537,893 to 5,539,335
_RS24715
PFLU_RS24720: PFLU_RS24720 - trehalose operon repressor, at 5,539,575 to 5,540,279
_RS24720
Group
Condition
PFLU
_RS24700
PFLU
_RS24705
PFLU
_RS24710
PFLU
_RS24715
PFLU
_RS24720
carbon source
L-Arabinose (C)
-0.0
+0.1
-1.9
-0.3
-0.2
carbon source
acetate (C)
+0.0
+0.2
-1.5
+0.3
-0.8
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.1
-1.2
+0.1
-0.6
carbon source
acetate (C)
+0.4
+0.2
-1.2
+0.4
-1.1
carbon source
L-Arabinose (C)
-0.5
+0.0
-0.9
+0.2
-0.2
carbon source
L-Arabinose (C)
-0.3
-0.0
-0.5
-0.1
-0.3
carbon source
L-Arabinose (C); with MOPS
+0.1
-0.1
-1.1
-0.1
+0.0
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.1
-0.9
+0.1
-0.4
carbon source
L-Arabinose (C); with MOPS
+0.2
+0.1
-1.1
+0.1
-0.3
carbon source
D-Glucose (C)
-0.3
+0.1
-0.4
+0.2
-0.5
carbon source
Trisodium citrate (C)
+0.1
-0.0
-1.0
+0.3
-0.3
carbon source
D-Glucose (C)
+0.1
+0.0
-0.5
-0.0
-0.5
carbon source
succinate (C); with MOPS
-0.1
-0.0
-0.5
+0.1
-0.3
carbon source
succinate (C)
+0.1
+0.1
-0.3
-0.0
-0.8
carbon source
succinate (C)
+0.0
+0.1
-0.5
+0.2
-0.5
carbon source
Trisodium citrate (C)
+0.2
+0.1
-0.7
+0.1
-0.4
carbon source
D-Glucose (C); with MOPS
-0.0
+0.2
-0.8
+0.1
-0.0
carbon source
acetate (C)
+0.5
+0.4
-1.2
+0.2
-0.5
carbon source
Trisodium citrate (C); with MOPS
+0.1
+0.2
-0.8
+0.3
-0.2
carbon source
acetate (C)
-0.2
+0.1
-0.4
+0.1
-0.2
carbon source
succinate (C); with MOPS
+0.0
+0.0
-0.7
+0.3
-0.2
carbon source
Trisodium citrate (C)
+0.2
+0.1
-0.9
+0.3
-0.1
carbon source
D-Glucose (C); with MOPS
-0.1
-0.0
-0.3
+0.3
-0.2
carbon source
Trisodium citrate (C); with MOPS
+0.3
-0.0
-0.5
+0.3
-0.3
carbon source
D-Glucose (C); with MOPS
+0.2
+0.1
-0.4
+0.2
+0.0
carbon source
NAG (C)
+0.1
+0.4
-2.1
+0.3
+1.8
carbon source
NAG (C)
+0.0
+0.5
-2.2
+0.3
+1.8
carbon source
NAG (C); with MOPS
-0.2
+0.6
-2.1
+0.5
+1.7
carbon source
NAG (C); with MOPS
-0.1
+0.5
-2.2
+0.5
+1.9
carbon source
NAG (C); with MOPS
+0.1
+0.5
-1.8
+0.3
+1.7
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