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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS24390 and PFLU_RS24395 overlap by 4 nucleotides
PFLU_RS24395 and PFLU_RS24400 are separated by 168 nucleotides
PFLU_RS24400 and PFLU_RS24405 are separated by 3 nucleotides
PFLU_RS24405 and PFLU_RS24410 are separated by 60 nucleotides
PFLU_RS24390: PFLU_RS24390 - efflux RND transporter periplasmic adaptor subunit, at 5,462,188 to 5,463,345
_RS24390
PFLU_RS24395: PFLU_RS24395 - multidrug efflux RND transporter permease subunit, at 5,463,342 to 5,466,401
_RS24395
PFLU_RS24400: PFLU_RS24400 - efflux RND transporter periplasmic adaptor subunit, at 5,466,570 to 5,467,700
_RS24400
PFLU_RS24405: PFLU_RS24405 - multidrug efflux RND transporter permease subunit, at 5,467,704 to 5,470,730
_RS24405
PFLU_RS24410: PFLU_RS24410 - hypothetical protein, at 5,470,791 to 5,471,018
_RS24410
Group
Condition
PFLU
_RS24390
PFLU
_RS24395
PFLU
_RS24400
PFLU
_RS24405
PFLU
_RS24410
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.2
-0.0
-0.2
N.D.
carbon source
L-Arabinose (C)
-0.0
-0.0
-0.1
-0.4
N.D.
carbon source
succinate (C); with MOPS
-0.3
-0.1
+0.1
-0.1
N.D.
carbon source
Trisodium citrate (C); with MOPS
-0.1
-0.0
-0.0
-0.1
N.D.
carbon source
L-Arabinose (C); with MOPS
-0.3
+0.1
+0.0
+0.0
N.D.
carbon source
D-Glucose (C)
-0.1
+0.0
-0.1
-0.0
N.D.
carbon source
D-Glucose (C); with MOPS
-0.2
+0.0
-0.1
+0.1
N.D.
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.0
-0.1
+0.0
N.D.
carbon source
Trisodium citrate (C); with MOPS
+0.1
-0.0
-0.1
-0.0
N.D.
carbon source
NAG (C); with MOPS
-0.2
+0.1
-0.1
+0.0
N.D.
carbon source
succinate (C)
+0.0
+0.1
-0.1
-0.1
N.D.
carbon source
Trisodium citrate (C)
-0.0
+0.1
-0.1
-0.1
N.D.
carbon source
D-Glucose (C); with MOPS
-0.1
-0.0
+0.0
-0.0
N.D.
carbon source
succinate (C)
-0.0
+0.0
+0.0
-0.1
N.D.
carbon source
acetate (C)
+0.1
+0.1
-0.0
-0.2
N.D.
carbon source
succinate (C); with MOPS
+0.1
+0.0
-0.1
+0.0
N.D.
carbon source
succinate (C)
+0.1
-0.0
-0.0
-0.0
N.D.
carbon source
NAG (C)
+0.0
+0.0
-0.1
+0.1
N.D.
carbon source
Trisodium citrate (C)
-0.0
-0.0
+0.1
+0.0
N.D.
carbon source
Trisodium citrate (C)
+0.1
+0.1
-0.1
+0.0
N.D.
carbon source
NAG (C); with MOPS
+0.1
+0.1
-0.0
-0.0
N.D.
carbon source
NAG (C)
+0.1
+0.1
-0.1
+0.1
N.D.
carbon source
D-Glucose (C)
+0.0
+0.0
+0.0
+0.1
N.D.
carbon source
D,L-Lactate (C)
+0.2
+0.0
-0.0
+0.1
N.D.
carbon source
D,L-Lactate (C)
+0.2
+0.0
+0.0
+0.0
N.D.
carbon source
L-Arabinose (C)
+0.2
-0.0
+0.1
+0.1
N.D.
carbon source
acetate (C)
+0.1
+0.0
+0.0
+0.3
N.D.
carbon source
acetate (C)
+0.2
+0.1
+0.1
+0.1
N.D.
carbon source
L-Arabinose (C)
+0.1
-0.0
+0.3
+0.0
N.D.
carbon source
D-Glucose (C)
+0.2
+0.1
+0.0
+0.1
N.D.
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