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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS24205 and PFLU_RS24210 are separated by 91 nucleotides
PFLU_RS24210 and PFLU_RS24215 are separated by 167 nucleotides
PFLU_RS24215 and PFLU_RS24220 overlap by 4 nucleotides
PFLU_RS24220 and PFLU_RS24225 overlap by 14 nucleotides
PFLU_RS24205: PFLU_RS24205 - DNA binding protein, at 5,419,518 to 5,419,892
_RS24205
PFLU_RS24210: PFLU_RS24210 - exodeoxyribonuclease I, at 5,419,984 to 5,421,411
_RS24210
PFLU_RS24215: PFLU_RS24215 - RDD family protein, at 5,421,579 to 5,422,271
_RS24215
PFLU_RS24220: PFLU_RS24220 - stage II sporulation protein M, at 5,422,268 to 5,423,248
_RS24220
PFLU_RS24225: PFLU_RS24225 - DUF4129 domain-containing protein, at 5,423,235 to 5,424,764
_RS24225
Group
Condition
PFLU
_RS24205
PFLU
_RS24210
PFLU
_RS24215
PFLU
_RS24220
PFLU
_RS24225
carbon source
succinate (C)
-3.0
-0.2
-0.2
-0.1
-0.0
carbon source
succinate (C)
-3.0
-0.1
-0.1
-0.0
-0.1
carbon source
succinate (C); with MOPS
-1.8
-0.2
-0.2
+0.0
-0.1
carbon source
D-Xylose (C)
-2.5
+0.2
+0.0
-0.0
-0.0
carbon source
NAG (C); with MOPS
-2.2
-0.2
+0.3
-0.0
-0.1
carbon source
L-Arabinose (C); with MOPS
-1.0
-0.9
+0.1
-0.3
-0.1
carbon source
L-Arabinose (C); with MOPS
-1.7
-0.1
-0.1
-0.1
-0.0
carbon source
acetate (C)
-1.8
-0.0
-0.2
-0.1
+0.2
carbon source
acetate (C)
-1.8
-0.2
-0.0
-0.1
+0.0
carbon source
acetate (C)
-1.8
-0.2
-0.0
+0.1
-0.0
carbon source
D,L-Lactate (C)
-1.9
+0.0
-0.0
+0.0
+0.0
carbon source
D-Xylose (C)
-2.2
+0.2
+0.1
+0.0
-0.1
carbon source
succinate (C)
-1.8
-0.1
-0.1
+0.0
+0.2
carbon source
Trisodium citrate (C)
-1.6
-0.0
-0.1
+0.1
-0.1
carbon source
Trisodium citrate (C)
-1.3
-0.2
-0.1
-0.0
-0.0
carbon source
D-Glucose (C)
-1.1
-0.3
-0.1
-0.0
-0.0
carbon source
Trisodium citrate (C)
-1.3
+0.0
-0.1
-0.0
-0.1
carbon source
NAG (C)
-1.6
-0.2
+0.2
+0.0
+0.1
carbon source
Trisodium citrate (C); with MOPS
-1.4
-0.2
+0.1
-0.0
+0.0
carbon source
succinate (C); with MOPS
-1.2
-0.0
+0.0
-0.1
-0.1
carbon source
NAG (C)
-1.3
-0.1
-0.0
-0.0
+0.2
carbon source
D-Glucose (C)
-0.9
-0.2
+0.0
+0.1
-0.0
carbon source
NAG (C); with MOPS
-1.3
-0.1
+0.2
+0.2
+0.0
carbon source
D-Glucose (C)
-1.0
-0.2
+0.2
+0.0
+0.1
carbon source
NAG (C); with MOPS
-0.6
-0.1
-0.3
+0.1
+0.1
carbon source
Trisodium citrate (C); with MOPS
-0.9
-0.2
+0.1
-0.1
+0.1
carbon source
D-Glucose (C); with MOPS
-0.8
-0.1
-0.0
+0.2
+0.1
carbon source
acetate (C)
-1.1
+0.3
-0.0
+0.1
+0.2
carbon source
L-Arabinose (C)
+0.8
-0.2
+0.1
+0.0
-0.1
carbon source
D-Glucose (C); with MOPS
+1.1
+0.0
-0.1
+0.0
+0.1
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