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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS24180 and PFLU_RS24185 are separated by 305 nucleotides
PFLU_RS24185 and PFLU_RS24190 are separated by 4 nucleotides
PFLU_RS24190 and PFLU_RS24195 are separated by 204 nucleotides
PFLU_RS24195 and PFLU_RS24200 are separated by 270 nucleotides
PFLU_RS24180: PFLU_RS24180 - preprotein translocase subunit SecA, at 5,410,975 to 5,413,710
_RS24180
PFLU_RS24185: PFLU_RS24185 - DUF721 domain-containing protein, at 5,414,016 to 5,414,471
_RS24185
PFLU_RS24190: PFLU_RS24190 - DUF853 family protein, at 5,414,476 to 5,415,954
_RS24190
PFLU_RS24195: PFLU_RS24195 - methyl-accepting chemotaxis protein, at 5,416,159 to 5,418,048
_RS24195
PFLU_RS24200: PFLU_RS24200 - formyltetrahydrofolate deformylase, at 5,418,319 to 5,419,167
_RS24200
Group
Condition
PFLU
_RS24180
PFLU
_RS24185
PFLU
_RS24190
PFLU
_RS24195
PFLU
_RS24200
carbon source
acetate (C)
N.D.
N.D.
-0.5
+0.1
N.D.
carbon source
L-Arabinose (C)
N.D.
N.D.
-0.2
-0.1
N.D.
carbon source
L-Arabinose (C)
N.D.
N.D.
-0.3
-0.0
N.D.
carbon source
L-Arabinose (C); with MOPS
N.D.
N.D.
-0.2
-0.0
N.D.
carbon source
succinate (C); with MOPS
N.D.
N.D.
-0.3
+0.0
N.D.
carbon source
L-Arabinose (C); with MOPS
N.D.
N.D.
-0.3
+0.0
N.D.
carbon source
Trisodium citrate (C); with MOPS
N.D.
N.D.
-0.2
+0.0
N.D.
carbon source
L-Arabinose (C); with MOPS
N.D.
N.D.
-0.3
+0.2
N.D.
carbon source
D-Glucose (C)
N.D.
N.D.
-0.2
+0.2
N.D.
carbon source
acetate (C)
N.D.
N.D.
-0.1
+0.1
N.D.
carbon source
succinate (C)
N.D.
N.D.
-0.2
+0.1
N.D.
carbon source
acetate (C)
N.D.
N.D.
+0.1
-0.1
N.D.
carbon source
Trisodium citrate (C); with MOPS
N.D.
N.D.
-0.1
+0.1
N.D.
carbon source
NAG (C); with MOPS
N.D.
N.D.
-0.0
+0.1
N.D.
carbon source
acetate (C)
N.D.
N.D.
-0.0
+0.1
N.D.
carbon source
D-Glucose (C)
N.D.
N.D.
-0.1
+0.1
N.D.
carbon source
succinate (C)
N.D.
N.D.
-0.0
+0.1
N.D.
carbon source
D-Glucose (C); with MOPS
N.D.
N.D.
+0.0
+0.1
N.D.
carbon source
Trisodium citrate (C)
N.D.
N.D.
-0.0
+0.1
N.D.
carbon source
succinate (C); with MOPS
N.D.
N.D.
-0.0
+0.1
N.D.
carbon source
D-Xylose (C)
N.D.
N.D.
+0.1
+0.1
N.D.
carbon source
Trisodium citrate (C)
N.D.
N.D.
+0.0
+0.1
N.D.
carbon source
L-Arabinose (C)
N.D.
N.D.
+0.0
+0.1
N.D.
carbon source
NAG (C)
N.D.
N.D.
+0.1
+0.0
N.D.
carbon source
NAG (C)
N.D.
N.D.
+0.1
+0.1
N.D.
carbon source
NAG (C); with MOPS
N.D.
N.D.
-0.0
+0.2
N.D.
carbon source
acetate (C)
N.D.
N.D.
+0.1
+0.1
N.D.
carbon source
D-Glucose (C); with MOPS
N.D.
N.D.
+0.0
+0.2
N.D.
carbon source
D-Xylose (C)
N.D.
N.D.
+0.2
+0.1
N.D.
carbon source
D-Glucose (C)
N.D.
N.D.
+0.2
+0.1
N.D.
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