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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS23885 and PFLU_RS23890 are separated by 174 nucleotides
PFLU_RS23890 and PFLU_RS23895 are separated by 144 nucleotides
PFLU_RS23895 and PFLU_RS23900 are separated by 176 nucleotides
PFLU_RS23900 and PFLU_RS23905 are separated by 12 nucleotides
PFLU_RS23885: PFLU_RS23885 - transposase, at 5,352,965 to 5,354,112
_RS23885
PFLU_RS23890: PFLU_RS23890 - pseudouridine synthase, at 5,354,287 to 5,355,498
_RS23890
PFLU_RS23895: PFLU_RS23895 - DUF1289 domain-containing protein, at 5,355,643 to 5,355,834
_RS23895
PFLU_RS23900: PFLU_RS23900 - SMC-Scp complex subunit ScpB, at 5,356,011 to 5,356,943
_RS23900
PFLU_RS23905: PFLU_RS23905 - segregation/condensation protein A, at 5,356,956 to 5,357,774
_RS23905
Group
Condition
PFLU
_RS23885
PFLU
_RS23890
PFLU
_RS23895
PFLU
_RS23900
PFLU
_RS23905
carbon source
NAG (C); with MOPS
-0.5
-3.1
-0.2
-0.2
+0.1
carbon source
NAG (C); with MOPS
-1.1
-1.7
-1.1
+0.2
-0.2
carbon source
NAG (C)
-0.7
-1.0
-1.1
-0.2
-0.1
carbon source
NAG (C)
-0.9
-1.0
-0.1
-0.6
-0.1
carbon source
L-Arabinose (C)
-0.2
-0.7
-1.7
+0.1
+0.1
carbon source
acetate (C)
+0.6
+0.4
-2.1
-0.7
+0.1
carbon source
D-Xylose (C)
-1.4
+0.2
-0.4
+0.0
+0.0
carbon source
acetate (C)
-2.2
+0.2
+0.2
+0.1
+0.2
carbon source
L-Arabinose (C)
+0.1
+0.8
-1.6
+0.0
+0.0
carbon source
D-Glucose (C); with MOPS
-0.9
+0.7
-0.6
+0.3
-0.2
carbon source
D-Glucose (C); with MOPS
+0.7
+1.3
-2.8
+0.3
-0.1
carbon source
succinate (C)
+0.0
+0.6
-1.1
+0.0
-0.2
carbon source
succinate (C); with MOPS
-1.4
+0.5
+0.7
+0.3
-0.0
carbon source
D-Glucose (C)
+1.3
+0.9
-1.7
-0.3
-0.1
carbon source
Trisodium citrate (C)
+0.8
+0.1
-0.6
+0.1
-0.0
carbon source
acetate (C)
+2.1
+0.6
-2.6
+0.6
-0.1
carbon source
D-Xylose (C)
+0.5
-0.7
+1.1
-0.3
+0.0
carbon source
D,L-Lactate (C)
-0.4
-0.1
+0.9
+0.3
-0.1
carbon source
succinate (C)
+0.8
+0.7
-0.7
-0.1
-0.1
carbon source
Trisodium citrate (C)
+0.3
+0.4
-0.6
+0.4
+0.1
carbon source
L-Arabinose (C)
-0.6
+1.4
-0.5
+0.3
-0.0
carbon source
L-Arabinose (C); with MOPS
-0.4
+0.4
+0.4
+0.4
-0.1
carbon source
Trisodium citrate (C); with MOPS
+1.3
+0.3
-0.8
-0.0
+0.1
carbon source
Trisodium citrate (C); with MOPS
+0.9
+0.6
-0.7
-0.0
+0.1
carbon source
D-Glucose (C)
+1.2
+0.1
-0.3
+0.0
+0.0
carbon source
L-Arabinose (C); with MOPS
-0.3
+0.9
+0.6
+0.3
+0.2
carbon source
L-Arabinose (C); with MOPS
+1.3
+0.5
-0.7
+0.3
+0.1
carbon source
acetate (C)
+0.2
+0.9
+0.6
-0.1
+0.1
carbon source
succinate (C); with MOPS
+0.9
+0.9
+0.3
-0.1
-0.2
carbon source
D-Glucose (C); with MOPS
+1.2
+0.4
+0.5
-0.1
+0.1
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