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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS23825 and PFLU_RS23830 are separated by 154 nucleotides
PFLU_RS23830 and PFLU_RS23835 overlap by 44 nucleotides
PFLU_RS23835 and PFLU_RS23840 are separated by 160 nucleotides
PFLU_RS23840 and PFLU_RS23845 are separated by 366 nucleotides
PFLU_RS23825: PFLU_RS23825 - hypothetical protein, at 5,337,903 to 5,342,081
_RS23825
PFLU_RS23830: PFLU_RS23830 - TrkH family potassium uptake protein, at 5,342,236 to 5,343,690
_RS23830
PFLU_RS23835: PFLU_RS23835 - AraC family transcriptional regulator, at 5,343,647 to 5,344,705
_RS23835
PFLU_RS23840: PFLU_RS23840 - DUF962 domain-containing protein, at 5,344,866 to 5,345,177
_RS23840
PFLU_RS23845: PFLU_RS23845 - hypothetical protein, at 5,345,544 to 5,345,726
_RS23845
Group
Condition
PFLU
_RS23825
PFLU
_RS23830
PFLU
_RS23835
PFLU
_RS23840
PFLU
_RS23845
carbon source
L-Arabinose (C); with MOPS
+0.1
-1.1
-0.3
-0.3
N.D.
carbon source
L-Arabinose (C)
+0.1
-0.9
-0.0
-0.3
N.D.
carbon source
L-Arabinose (C); with MOPS
+0.1
-0.7
-0.2
-0.1
N.D.
carbon source
L-Arabinose (C); with MOPS
-0.1
-0.6
+0.0
-0.2
N.D.
carbon source
Trisodium citrate (C)
-0.1
-0.1
-0.1
-0.3
N.D.
carbon source
NAG (C); with MOPS
+0.1
-0.4
-0.1
-0.2
N.D.
carbon source
acetate (C)
+0.0
+0.0
-0.2
-0.3
N.D.
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.4
+0.1
-0.1
N.D.
carbon source
succinate (C)
-0.1
-0.3
+0.1
-0.1
N.D.
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.6
+0.1
+0.1
N.D.
carbon source
L-Arabinose (C)
-0.1
-0.9
+0.2
+0.3
N.D.
carbon source
Trisodium citrate (C)
+0.0
-0.4
+0.0
-0.1
N.D.
carbon source
D-Glucose (C)
-0.0
+0.0
-0.4
+0.0
N.D.
carbon source
NAG (C); with MOPS
-0.0
-0.2
+0.1
-0.3
N.D.
carbon source
succinate (C); with MOPS
-0.0
-0.4
+0.1
+0.1
N.D.
carbon source
NAG (C); with MOPS
+0.1
-0.3
+0.1
-0.0
N.D.
carbon source
L-Arabinose (C)
+0.1
-0.5
-0.2
+0.4
N.D.
carbon source
D-Glucose (C); with MOPS
+0.0
-0.3
+0.1
+0.0
N.D.
carbon source
acetate (C)
-0.1
+0.1
-0.9
+0.7
N.D.
carbon source
acetate (C)
+0.0
-0.1
+0.3
-0.3
N.D.
carbon source
NAG (C)
-0.0
+0.1
+0.1
-0.2
N.D.
carbon source
succinate (C); with MOPS
+0.0
-0.3
+0.2
+0.1
N.D.
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.4
+0.0
+0.3
N.D.
carbon source
D-Glucose (C)
+0.0
-0.2
+0.2
-0.0
N.D.
carbon source
D,L-Lactate (C)
-0.1
-0.1
+0.3
-0.0
N.D.
carbon source
succinate (C)
+0.0
-0.3
+0.2
+0.2
N.D.
carbon source
succinate (C)
+0.0
-0.2
+0.2
+0.2
N.D.
carbon source
D-Xylose (C)
-0.0
+0.1
+0.2
-0.1
N.D.
carbon source
D-Glucose (C); with MOPS
-0.0
-0.0
+0.2
+0.2
N.D.
carbon source
acetate (C)
+0.1
-0.0
+0.2
+0.1
N.D.
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