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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS23510 and PFLU_RS23515 are separated by 120 nucleotides
PFLU_RS23515 and PFLU_RS23520 overlap by 4 nucleotides
PFLU_RS23520 and PFLU_RS23525 are separated by 106 nucleotides
PFLU_RS23525 and PFLU_RS23530 overlap by 102 nucleotides
PFLU_RS23510: PFLU_RS23510 - 5-oxoprolinase subunit PxpA, at 5,279,650 to 5,280,411
_RS23510
PFLU_RS23515: PFLU_RS23515 - LysR family transcriptional regulator, at 5,280,532 to 5,281,449
_RS23515
PFLU_RS23520: PFLU_RS23520 - LysR family transcriptional regulator, at 5,281,446 to 5,282,342
_RS23520
PFLU_RS23525: PFLU_RS23525 - SDR family oxidoreductase, at 5,282,449 to 5,283,207
_RS23525
PFLU_RS23530: PFLU_RS23530 - multidrug/biocide efflux PACE transporter, at 5,283,106 to 5,283,618
_RS23530
Group
Condition
PFLU
_RS23510
PFLU
_RS23515
PFLU
_RS23520
PFLU
_RS23525
PFLU
_RS23530
carbon source
L-Arabinose (C)
+0.2
-0.0
-0.5
-0.5
-0.0
carbon source
NAG (C); with MOPS
+0.1
-0.3
-0.1
-0.4
-0.1
carbon source
acetate (C)
+0.1
-0.1
+0.1
-0.7
-0.1
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.1
-0.3
-0.2
-0.1
carbon source
D-Glucose (C); with MOPS
+0.0
-0.1
-0.2
-0.3
-0.0
carbon source
D-Xylose (C)
-0.0
-0.1
-0.2
-0.3
-0.0
carbon source
acetate (C)
+0.1
-0.1
-0.1
-0.2
-0.2
carbon source
acetate (C)
-0.1
+0.1
-0.0
-0.4
-0.0
carbon source
NAG (C)
-0.0
+0.0
-0.2
-0.2
-0.0
carbon source
succinate (C); with MOPS
+0.0
+0.1
-0.1
-0.3
-0.0
carbon source
succinate (C)
-0.1
+0.2
-0.0
-0.3
-0.0
carbon source
NAG (C); with MOPS
+0.1
+0.1
-0.3
-0.0
-0.1
carbon source
Trisodium citrate (C)
+0.0
-0.0
-0.1
-0.2
+0.1
carbon source
D-Glucose (C)
+0.1
-0.1
-0.0
-0.2
-0.0
carbon source
D-Glucose (C); with MOPS
+0.1
+0.2
+0.0
-0.5
+0.1
carbon source
succinate (C)
-0.1
+0.1
-0.2
+0.0
+0.0
carbon source
NAG (C); with MOPS
+0.1
+0.2
-0.1
-0.3
-0.0
carbon source
D,L-Lactate (C)
+0.1
+0.2
+0.1
-0.4
+0.0
carbon source
D-Glucose (C)
+0.0
+0.2
+0.0
-0.2
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.0
+0.4
+0.0
-0.4
+0.0
carbon source
D-Glucose (C); with MOPS
+0.1
+0.2
+0.1
-0.2
+0.0
carbon source
acetate (C)
+0.0
+0.0
-0.1
+0.2
+0.0
carbon source
Trisodium citrate (C)
+0.1
+0.1
-0.1
+0.2
+0.1
carbon source
D-Glucose (C)
+0.1
+0.2
-0.0
-0.0
+0.0
carbon source
Trisodium citrate (C); with MOPS
-0.0
+0.2
+0.1
+0.0
+0.0
carbon source
succinate (C); with MOPS
-0.1
-0.0
+0.2
+0.2
-0.0
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.1
-0.0
+0.3
-0.0
carbon source
NAG (C)
-0.0
+0.2
-0.1
+0.3
-0.0
carbon source
L-Arabinose (C)
+0.5
+0.1
-0.3
+0.3
-0.0
carbon source
acetate (C)
+0.1
+0.2
+0.2
+0.4
+0.1
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