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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS23145 and PFLU_RS23150 overlap by 4 nucleotides
PFLU_RS23150 and PFLU_RS23155 are separated by 780 nucleotides
PFLU_RS23155 and PFLU_RS23160 are separated by 101 nucleotides
PFLU_RS23160 and PFLU_RS23165 are separated by 181 nucleotides
PFLU_RS23145: PFLU_RS23145 - HAMP domain-containing protein, at 5,199,773 to 5,201,383
_RS23145
PFLU_RS23150: PFLU_RS23150 - response regulator, at 5,201,380 to 5,202,105
_RS23150
PFLU_RS23155: PFLU_RS23155 - ribonucleoside-diphosphate reductase subunit alpha, at 5,202,886 to 5,205,780
_RS23155
PFLU_RS23160: PFLU_RS23160 - hypothetical protein, at 5,205,882 to 5,206,973
_RS23160
PFLU_RS23165: PFLU_RS23165 - flagellar hook protein FlgE, at 5,207,155 to 5,208,459
_RS23165
Group
Condition
PFLU
_RS23145
PFLU
_RS23150
PFLU
_RS23155
PFLU
_RS23160
PFLU
_RS23165
carbon source
L-Arabinose (C)
+0.0
+0.1
N.D.
-0.1
-1.3
carbon source
L-Arabinose (C)
-0.2
+0.3
N.D.
+0.1
-1.2
carbon source
acetate (C)
-0.1
-0.6
N.D.
-0.2
+0.2
carbon source
L-Arabinose (C)
-0.0
+0.6
N.D.
-0.2
-0.7
carbon source
D-Glucose (C)
-0.1
-0.6
N.D.
-0.0
+0.7
carbon source
acetate (C)
+0.0
-0.4
N.D.
+0.0
+0.5
carbon source
Trisodium citrate (C); with MOPS
-0.2
-0.4
N.D.
-0.1
+0.8
carbon source
L-Arabinose (C); with MOPS
-0.1
+0.4
N.D.
+0.2
-0.2
carbon source
succinate (C); with MOPS
-0.2
-0.1
N.D.
-0.0
+0.6
carbon source
D-Glucose (C)
-0.1
-0.0
N.D.
-0.0
+0.7
carbon source
Trisodium citrate (C)
-0.1
-0.0
N.D.
+0.0
+0.7
carbon source
D-Glucose (C); with MOPS
-0.1
+0.2
N.D.
-0.1
+0.5
carbon source
succinate (C); with MOPS
-0.1
+0.1
N.D.
-0.0
+0.6
carbon source
Trisodium citrate (C); with MOPS
-0.2
-0.1
N.D.
+0.1
+0.8
carbon source
acetate (C)
-0.2
+0.6
N.D.
+0.1
+0.1
carbon source
D-Xylose (C)
-0.1
-0.1
N.D.
-0.1
+1.0
carbon source
Trisodium citrate (C); with MOPS
-0.1
-0.2
N.D.
+0.0
+0.9
carbon source
NAG (C); with MOPS
-0.2
-0.1
N.D.
-0.1
+1.1
carbon source
NAG (C); with MOPS
-0.1
-0.1
N.D.
-0.1
+1.0
carbon source
Trisodium citrate (C)
+0.1
-0.1
N.D.
+0.1
+0.6
carbon source
succinate (C)
-0.0
+0.3
N.D.
-0.0
+0.5
carbon source
D-Glucose (C); with MOPS
-0.1
+0.1
N.D.
-0.0
+0.8
carbon source
succinate (C); with MOPS
+0.0
+0.4
N.D.
-0.0
+0.5
carbon source
Trisodium citrate (C)
-0.1
+0.3
N.D.
-0.0
+0.7
carbon source
D-Glucose (C); with MOPS
+0.0
+0.3
N.D.
-0.1
+0.7
carbon source
D-Xylose (C)
-0.0
+0.1
N.D.
+0.0
+0.9
carbon source
NAG (C); with MOPS
-0.1
-0.0
N.D.
+0.0
+1.1
carbon source
D-Glucose (C)
-0.0
+0.2
N.D.
+0.1
+0.7
carbon source
NAG (C)
-0.0
-0.1
N.D.
+0.0
+1.4
carbon source
NAG (C)
-0.1
+0.2
N.D.
-0.0
+1.5
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