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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS22580 and PFLU_RS22585 overlap by 1 nucleotides
PFLU_RS22585 and PFLU_RS22590 are separated by 26 nucleotides
PFLU_RS22590 and PFLU_RS22595 are separated by 60 nucleotides
PFLU_RS22595 and PFLU_RS22600 are separated by 107 nucleotides
PFLU_RS22580: PFLU_RS22580 - NarK/NasA family nitrate transporter, at 5,083,856 to 5,085,067
_RS22580
PFLU_RS22585: PFLU_RS22585 - bifunctional protein-serine/threonine kinase/phosphatase, at 5,085,067 to 5,086,737
_RS22585
PFLU_RS22590: PFLU_RS22590 - uroporphyrinogen-III C-methyltransferase, at 5,086,764 to 5,087,507
_RS22590
PFLU_RS22595: PFLU_RS22595 - OmpA family protein, at 5,087,568 to 5,088,548
_RS22595
PFLU_RS22600: PFLU_RS22600 - RNA polymerase sigma factor SigX, at 5,088,656 to 5,089,246
_RS22600
Group
Condition
PFLU
_RS22580
PFLU
_RS22585
PFLU
_RS22590
PFLU
_RS22595
PFLU
_RS22600
carbon source
L-Arabinose (C); with MOPS
-0.3
-0.1
+0.0
-2.1
-2.0
carbon source
Trisodium citrate (C)
-0.0
-0.1
-0.1
-2.3
-1.7
carbon source
Trisodium citrate (C)
+0.1
-0.1
-0.1
-2.3
-1.8
carbon source
L-Arabinose (C)
-0.2
+0.0
-0.1
-2.0
-1.6
carbon source
D,L-Lactate (C)
-0.0
-0.0
-0.0
-3.2
-0.5
carbon source
D,L-Lactate (C)
-0.0
+0.0
+0.1
-2.9
-0.9
carbon source
succinate (C)
+0.1
-0.1
-0.3
-1.7
-1.7
carbon source
D-Xylose (C)
+0.0
-0.1
-0.1
-3.8
+0.2
carbon source
L-Arabinose (C); with MOPS
-0.2
-0.0
-0.0
-2.2
-1.2
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.3
+0.1
-2.1
-1.3
carbon source
succinate (C)
-0.2
-0.0
-0.1
-1.8
-1.5
carbon source
acetate (C)
+0.0
+0.1
+0.1
-3.3
-0.4
carbon source
succinate (C); with MOPS
-0.1
-0.0
-0.1
-1.8
-1.4
carbon source
Trisodium citrate (C)
-0.1
-0.1
-0.0
-2.1
-1.0
carbon source
NAG (C)
-0.1
+0.1
-0.2
-3.3
+0.1
carbon source
succinate (C); with MOPS
+0.0
-0.1
-0.2
-2.1
-0.9
carbon source
acetate (C)
-0.1
-0.1
+0.0
-3.3
+0.1
carbon source
D-Xylose (C)
-0.1
+0.0
-0.0
-3.6
+0.4
carbon source
Trisodium citrate (C); with MOPS
-0.1
-0.0
+0.0
-2.3
-0.9
carbon source
L-Arabinose (C)
-0.4
-0.0
-0.1
-1.9
-0.8
carbon source
succinate (C); with MOPS
-0.0
+0.1
-0.1
-2.0
-1.0
carbon source
D-Glucose (C)
-0.0
+0.0
+0.2
-2.3
-1.0
carbon source
NAG (C)
-0.0
+0.2
+0.0
-3.3
+0.1
carbon source
D-Glucose (C)
-0.0
-0.0
+0.2
-2.3
-0.7
carbon source
L-Arabinose (C); with MOPS
+0.4
+0.0
-0.7
-1.6
-0.8
carbon source
acetate (C)
-0.3
-0.1
-0.1
-1.9
+1.0
carbon source
NAG (C); with MOPS
-0.0
-0.0
+0.1
-2.2
+1.3
carbon source
acetate (C)
-0.1
-0.1
-0.3
-1.7
+1.7
carbon source
NAG (C); with MOPS
+0.0
+0.1
+0.0
-2.3
+1.8
carbon source
acetate (C)
-0.1
-0.2
+0.2
-1.9
+2.5
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