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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS22235 and PFLU_RS22240 are separated by 335 nucleotides
PFLU_RS22240 and PFLU_RS22245 are separated by 284 nucleotides
PFLU_RS22245 and PFLU_RS22250 are separated by 106 nucleotides
PFLU_RS22250 and PFLU_RS22255 overlap by 7 nucleotides
PFLU_RS22235: PFLU_RS22235 - ABC transporter ATP-binding protein, at 4,998,091 to 4,999,923
_RS22235
PFLU_RS22240: PFLU_RS22240 - N-acetyltransferase, at 5,000,259 to 5,001,383
_RS22240
PFLU_RS22245: PFLU_RS22245 - hypothetical protein, at 5,001,668 to 5,003,011
_RS22245
PFLU_RS22250: PFLU_RS22250 - hypothetical protein, at 5,003,118 to 5,003,363
_RS22250
PFLU_RS22255: PFLU_RS22255 - RNA polymerase sigma factor, at 5,003,357 to 5,003,971
_RS22255
Group
Condition
PFLU
_RS22235
PFLU
_RS22240
PFLU
_RS22245
PFLU
_RS22250
PFLU
_RS22255
carbon source
NAG (C); with MOPS
-0.1
+0.2
+0.0
-1.5
+0.1
carbon source
NAG (C); with MOPS
+0.0
+0.1
-0.0
-1.0
+0.0
carbon source
D-Xylose (C)
-0.1
+0.0
-0.1
-0.4
-0.2
carbon source
Trisodium citrate (C); with MOPS
+0.1
-0.2
-0.2
-0.4
-0.0
carbon source
D,L-Lactate (C)
-0.3
-0.2
+0.1
-0.5
+0.1
carbon source
D,L-Lactate (C)
-0.3
+0.1
-0.1
-0.3
+0.0
carbon source
L-Arabinose (C); with MOPS
-0.0
+0.0
+0.0
-0.4
+0.0
carbon source
NAG (C)
+0.0
+0.2
+0.0
-0.3
-0.0
carbon source
succinate (C); with MOPS
+0.0
+0.1
-0.1
-0.3
+0.2
carbon source
D-Glucose (C); with MOPS
+0.0
-0.2
-0.1
+0.3
-0.1
carbon source
NAG (C)
-0.0
+0.3
-0.1
-0.3
+0.1
carbon source
succinate (C)
-0.0
+0.1
-0.1
+0.2
-0.1
carbon source
Trisodium citrate (C)
+0.3
+0.0
-0.1
-0.1
-0.1
carbon source
succinate (C); with MOPS
+0.1
-0.0
-0.0
+0.3
-0.1
carbon source
D-Glucose (C)
+0.0
+0.0
+0.0
+0.3
-0.2
carbon source
acetate (C)
+0.3
-0.0
-0.3
+0.4
-0.0
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.2
-0.2
-0.0
+0.1
carbon source
Trisodium citrate (C)
+0.1
+0.1
-0.1
+0.4
-0.1
carbon source
D-Glucose (C); with MOPS
-0.2
-0.3
+0.0
+0.6
+0.2
carbon source
L-Arabinose (C)
+0.0
+0.2
+0.1
-0.5
+0.5
carbon source
L-Arabinose (C)
+0.5
+0.1
+0.2
-0.6
+0.3
carbon source
Trisodium citrate (C)
+0.2
-0.0
-0.2
+0.5
+0.1
carbon source
succinate (C)
+0.1
+0.1
-0.0
+0.3
+0.1
carbon source
L-Arabinose (C)
-0.1
+0.1
+0.0
+0.0
+0.5
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.3
-0.0
+0.1
-0.2
carbon source
D-Glucose (C)
+0.2
+0.2
+0.0
+0.2
-0.0
carbon source
succinate (C)
+0.2
-0.0
+0.1
+0.3
+0.1
carbon source
acetate (C)
-0.1
-0.1
+0.1
+0.8
+0.1
carbon source
succinate (C); with MOPS
+0.4
+0.1
-0.0
+0.5
-0.1
carbon source
acetate (C)
+0.2
+0.1
-0.0
+1.0
+0.2
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