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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS31770 and PFLU_RS22110 are separated by 105 nucleotides
PFLU_RS22110 and PFLU_RS22115 are separated by 6 nucleotides
PFLU_RS22115 and PFLU_RS22120 are separated by 296 nucleotides
PFLU_RS22120 and PFLU_RS22125 overlap by 1 nucleotides
PFLU_RS31770: PFLU_RS31770 - DTW domain-containing protein, at 4,975,110 to 4,975,202
_RS31770
PFLU_RS22110: PFLU_RS22110 - DTW domain-containing protein, at 4,975,308 to 4,975,913
_RS22110
PFLU_RS22115: PFLU_RS22115 - LysR family transcriptional regulator, at 4,975,920 to 4,976,813
_RS22115
PFLU_RS22120: PFLU_RS22120 - agmatinase, at 4,977,110 to 4,978,060
_RS22120
PFLU_RS22125: PFLU_RS22125 - ketosteroid isomerase, at 4,978,060 to 4,978,482
_RS22125
Group
Condition
PFLU
_RS31770
PFLU
_RS22110
PFLU
_RS22115
PFLU
_RS22120
PFLU
_RS22125
carbon source
D-Glucose (C)
-0.3
-0.4
+0.0
+0.0
+0.1
carbon source
NAG (C)
-0.3
+0.1
-0.1
+0.1
-0.1
carbon source
D-Glucose (C)
-0.2
-0.1
+0.0
+0.1
-0.1
carbon source
succinate (C)
+0.2
-0.4
+0.1
-0.1
-0.2
carbon source
Trisodium citrate (C)
+0.1
-0.3
+0.2
-0.0
-0.2
carbon source
acetate (C)
+0.1
-0.1
-0.1
+0.1
-0.3
carbon source
succinate (C)
-0.1
-0.1
+0.2
+0.1
-0.3
carbon source
NAG (C)
+0.3
+0.0
-0.2
-0.0
-0.2
carbon source
D-Xylose (C)
-0.0
+0.0
+0.1
+0.2
-0.3
carbon source
Trisodium citrate (C); with MOPS
-0.4
+0.0
-0.0
-0.0
+0.4
carbon source
NAG (C); with MOPS
-0.3
-0.1
-0.0
+0.0
+0.5
carbon source
succinate (C); with MOPS
+0.2
-0.3
+0.1
+0.1
+0.0
carbon source
Trisodium citrate (C)
+0.2
-0.2
+0.2
-0.0
+0.2
carbon source
L-Arabinose (C); with MOPS
+0.4
-0.3
+0.2
+0.0
+0.1
carbon source
Trisodium citrate (C)
+0.3
-0.1
+0.0
-0.0
+0.1
carbon source
succinate (C); with MOPS
+0.2
+0.1
-0.1
+0.1
-0.0
carbon source
D-Xylose (C)
+0.3
+0.1
-0.2
+0.1
+0.1
carbon source
succinate (C); with MOPS
+0.2
-0.2
+0.1
+0.1
+0.3
carbon source
Trisodium citrate (C); with MOPS
+0.2
-0.1
+0.1
-0.1
+0.3
carbon source
D-Glucose (C); with MOPS
+0.2
-0.1
+0.0
+0.0
+0.4
carbon source
NAG (C); with MOPS
+0.1
-0.1
+0.0
+0.2
+0.3
carbon source
L-Arabinose (C)
+0.3
-0.3
+0.3
+0.2
+0.2
carbon source
acetate (C)
-0.0
-0.2
+0.1
+0.1
+0.7
carbon source
L-Arabinose (C)
+0.6
-0.3
+0.2
-0.1
+0.2
carbon source
succinate (C)
+0.3
-0.2
+0.3
+0.3
+0.2
carbon source
L-Arabinose (C)
+0.6
+0.0
+0.2
+0.2
-0.1
carbon source
acetate (C)
-0.3
-0.1
+0.0
+0.2
+1.0
carbon source
L-Arabinose (C); with MOPS
+0.5
+0.1
+0.1
+0.1
+0.4
carbon source
L-Arabinose (C); with MOPS
+0.9
-0.5
+0.2
+0.1
+0.5
carbon source
acetate (C)
+0.7
-0.3
+0.4
+0.0
+0.6
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