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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS21885 and PFLU_RS21890 are separated by 137 nucleotides
PFLU_RS21890 and PFLU_RS21895 are separated by 99 nucleotides
PFLU_RS21895 and PFLU_RS21900 are separated by 132 nucleotides
PFLU_RS21900 and PFLU_RS21905 are separated by 40 nucleotides
PFLU_RS21885: PFLU_RS21885 - UDP-2,3-diacylglucosamine diphosphatase, at 4,927,602 to 4,928,411
_RS21885
PFLU_RS21890: PFLU_RS21890 - helix-turn-helix transcriptional regulator, at 4,928,549 to 4,929,298
_RS21890
PFLU_RS21895: PFLU_RS21895 - DMT family transporter, at 4,929,398 to 4,930,282
_RS21895
PFLU_RS21900: PFLU_RS21900 - hypothetical protein, at 4,930,415 to 4,930,696
_RS21900
PFLU_RS21905: PFLU_RS21905 - SelT/SelW/SelH family protein, at 4,930,737 to 4,931,024
_RS21905
Group
Condition
PFLU
_RS21885
PFLU
_RS21890
PFLU
_RS21895
PFLU
_RS21900
PFLU
_RS21905
carbon source
acetate (C)
-0.1
-0.0
-1.0
-0.2
-0.7
carbon source
L-Arabinose (C)
-0.0
+0.1
-0.9
-0.3
-0.1
carbon source
acetate (C)
-0.3
+0.4
-0.3
-0.1
-0.9
carbon source
L-Arabinose (C); with MOPS
-0.2
+0.1
-0.3
+0.1
-0.3
carbon source
Trisodium citrate (C)
-0.1
-0.0
-0.2
-0.1
-0.1
carbon source
succinate (C); with MOPS
-0.3
+0.2
-0.5
+0.1
-0.1
carbon source
NAG (C)
+0.1
-0.0
-0.2
-0.2
-0.2
carbon source
Trisodium citrate (C); with MOPS
-0.0
-0.2
-0.3
+0.1
-0.0
carbon source
acetate (C)
-0.1
+0.4
-0.7
+0.0
-0.1
carbon source
D,L-Lactate (C)
+0.0
-0.2
+0.2
-0.2
-0.1
carbon source
D-Glucose (C)
-0.3
-0.2
+0.2
-0.0
+0.1
carbon source
D-Glucose (C); with MOPS
-0.1
+0.1
-0.3
+0.0
+0.1
carbon source
succinate (C); with MOPS
+0.0
-0.0
-0.1
-0.2
+0.2
carbon source
NAG (C)
-0.0
-0.1
+0.0
-0.3
+0.3
carbon source
D-Glucose (C)
-0.2
-0.1
-0.1
-0.1
+0.5
carbon source
D,L-Lactate (C)
+0.1
+0.0
-0.2
-0.2
+0.3
carbon source
succinate (C)
-0.1
+0.1
+0.4
-0.3
+0.1
carbon source
L-Arabinose (C); with MOPS
-0.1
-0.1
+0.1
+0.5
-0.2
carbon source
D-Glucose (C); with MOPS
-0.1
+0.1
+0.3
+0.0
-0.1
carbon source
acetate (C)
+0.1
-0.1
-0.1
+0.2
+0.2
carbon source
Trisodium citrate (C); with MOPS
-0.1
-0.0
+0.2
+0.3
-0.0
carbon source
D-Glucose (C)
-0.1
+0.1
+0.2
-0.1
+0.1
carbon source
succinate (C)
-0.0
+0.1
-0.1
-0.0
+0.4
carbon source
NAG (C); with MOPS
-0.0
+0.3
+0.5
-0.3
-0.1
carbon source
L-Arabinose (C); with MOPS
+0.1
+0.1
+0.6
-0.3
-0.1
carbon source
D-Xylose (C)
+0.1
-0.1
-0.1
+0.2
+0.3
carbon source
D-Glucose (C); with MOPS
-0.2
-0.1
+0.4
+0.4
-0.1
carbon source
L-Arabinose (C)
-0.1
+0.0
+0.2
+0.4
+0.1
carbon source
L-Arabinose (C)
-0.0
-0.4
+0.3
+0.6
+0.2
carbon source
Trisodium citrate (C)
+0.0
+0.1
+0.2
+0.3
+0.4
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