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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS21855 and PFLU_RS21860 are separated by 62 nucleotides
PFLU_RS21860 and PFLU_RS21865 are separated by 347 nucleotides
PFLU_RS21865 and PFLU_RS21870 are separated by 257 nucleotides
PFLU_RS21870 and PFLU_RS21875 are separated by 96 nucleotides
PFLU_RS21855: PFLU_RS21855 - flagellar basal-body rod protein FlgG, at 4,921,282 to 4,922,067
_RS21855
PFLU_RS21860: PFLU_RS21860 - flagellar basal body rod protein FlgF, at 4,922,130 to 4,922,870
_RS21860
PFLU_RS21865: PFLU_RS21865 - sigma-54-dependent phenylalanine hydroxylase transcriptional regulator PhhR, at 4,923,218 to 4,924,780
_RS21865
PFLU_RS21870: PFLU_RS21870 - phenylalanine 4-monooxygenase, at 4,925,038 to 4,925,829
_RS21870
PFLU_RS21875: PFLU_RS21875 - 4a-hydroxytetrahydrobiopterin dehydratase, at 4,925,926 to 4,926,282
_RS21875
Group
Condition
PFLU
_RS21855
PFLU
_RS21860
PFLU
_RS21865
PFLU
_RS21870
PFLU
_RS21875
carbon source
L-Arabinose (C)
-1.0
-1.5
-0.2
-0.1
N.D.
carbon source
L-Arabinose (C)
-0.6
-1.4
-0.2
-0.1
N.D.
carbon source
D-Glucose (C); with MOPS
+0.6
+0.6
+0.0
-0.2
N.D.
carbon source
L-Arabinose (C); with MOPS
+0.3
+0.8
-0.2
+0.2
N.D.
carbon source
acetate (C)
+0.7
+0.8
-0.1
-0.2
N.D.
carbon source
succinate (C)
+0.4
+0.9
-0.1
+0.2
N.D.
carbon source
succinate (C); with MOPS
+0.6
+0.7
-0.1
+0.1
N.D.
carbon source
succinate (C); with MOPS
+0.6
+0.6
+0.0
+0.1
N.D.
carbon source
acetate (C)
+0.9
+0.9
-0.2
-0.1
N.D.
carbon source
succinate (C)
+0.7
+0.6
+0.0
+0.2
N.D.
carbon source
Trisodium citrate (C); with MOPS
+0.6
+0.9
-0.0
+0.1
N.D.
carbon source
D-Glucose (C); with MOPS
+0.7
+1.0
-0.0
-0.1
N.D.
carbon source
D-Xylose (C)
+0.8
+0.8
-0.0
-0.1
N.D.
carbon source
D-Xylose (C)
+0.8
+0.8
+0.0
-0.0
N.D.
carbon source
Trisodium citrate (C); with MOPS
+0.9
+0.9
-0.1
-0.0
N.D.
carbon source
succinate (C); with MOPS
+0.8
+0.7
+0.1
+0.2
N.D.
carbon source
D-Glucose (C); with MOPS
+0.9
+0.9
-0.1
+0.0
N.D.
carbon source
acetate (C)
+0.8
+0.7
+0.2
+0.1
N.D.
carbon source
Trisodium citrate (C); with MOPS
+0.8
+1.1
+0.1
-0.1
N.D.
carbon source
Trisodium citrate (C)
+0.8
+0.9
+0.1
+0.2
N.D.
carbon source
D-Glucose (C)
+1.0
+1.0
+0.1
+0.1
N.D.
carbon source
D-Glucose (C)
+1.1
+1.0
-0.1
+0.1
N.D.
carbon source
Trisodium citrate (C)
+0.9
+0.9
+0.1
+0.3
N.D.
carbon source
Trisodium citrate (C)
+0.9
+1.1
+0.0
+0.1
N.D.
carbon source
D-Glucose (C)
+1.0
+1.2
+0.1
+0.0
N.D.
carbon source
NAG (C)
+1.5
+1.2
+0.1
-0.1
N.D.
carbon source
NAG (C)
+1.5
+1.5
+0.1
+0.0
N.D.
carbon source
NAG (C); with MOPS
+1.6
+1.9
+0.1
-0.0
N.D.
carbon source
NAG (C); with MOPS
+1.3
+1.9
+0.2
+0.1
N.D.
carbon source
NAG (C); with MOPS
+1.6
+1.8
+0.1
+0.3
N.D.
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