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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS21735 and PFLU_RS21740 are separated by 405 nucleotides
PFLU_RS21740 and PFLU_RS21745 are separated by 30 nucleotides
PFLU_RS21745 and PFLU_RS21750 overlap by 4 nucleotides
PFLU_RS21750 and PFLU_RS21755 are separated by 261 nucleotides
PFLU_RS21735: PFLU_RS21735 - flagellar hook-length control protein FliK, at 4,893,958 to 4,895,298
_RS21735
PFLU_RS21740: PFLU_RS21740 - Hpt domain-containing protein, at 4,895,704 to 4,896,057
_RS21740
PFLU_RS21745: PFLU_RS21745 - fused response regulator/phosphatase, at 4,896,088 to 4,897,806
_RS21745
PFLU_RS21750: PFLU_RS21750 - STAS domain-containing protein, at 4,897,803 to 4,898,108
_RS21750
PFLU_RS21755: PFLU_RS21755 - flagella biosynthesis chaperone FliJ, at 4,898,370 to 4,898,819
_RS21755
Group
Condition
PFLU
_RS21735
PFLU
_RS21740
PFLU
_RS21745
PFLU
_RS21750
PFLU
_RS21755
carbon source
L-Arabinose (C)
-1.0
+0.9
-0.1
+0.1
-1.2
carbon source
L-Arabinose (C)
-1.0
+1.0
+0.2
-0.1
-0.9
carbon source
succinate (C)
+0.5
-0.6
+0.1
-0.2
+0.6
carbon source
L-Arabinose (C)
-0.1
+1.2
+0.2
+0.2
-0.7
carbon source
D-Xylose (C)
+0.8
-1.0
+0.1
+0.0
+0.8
carbon source
succinate (C)
+0.5
-0.2
+0.2
-0.1
+0.5
carbon source
NAG (C)
+1.4
-2.0
+0.2
-0.1
+1.5
carbon source
NAG (C)
+1.3
-1.5
+0.1
-0.1
+1.4
carbon source
succinate (C); with MOPS
+0.6
-0.2
+0.2
+0.2
+0.6
carbon source
D-Xylose (C)
+1.0
-0.6
+0.2
-0.0
+0.8
carbon source
D-Glucose (C); with MOPS
+0.9
-0.1
-0.1
-0.1
+0.7
carbon source
Trisodium citrate (C); with MOPS
+1.0
-0.1
-0.1
-0.3
+0.9
carbon source
D-Glucose (C); with MOPS
+0.8
-0.1
-0.0
+0.1
+0.8
carbon source
succinate (C); with MOPS
+0.9
+0.0
+0.0
-0.0
+0.6
carbon source
acetate (C)
+0.2
+1.0
-0.1
+0.1
+0.5
carbon source
succinate (C); with MOPS
+0.7
-0.1
+0.1
+0.1
+0.8
carbon source
Trisodium citrate (C); with MOPS
+1.0
-0.2
+0.0
-0.0
+0.8
carbon source
D-Glucose (C); with MOPS
+1.0
-0.2
-0.0
+0.2
+0.7
carbon source
Trisodium citrate (C)
+0.9
-0.2
+0.0
+0.0
+1.0
carbon source
D-Glucose (C)
+0.9
+0.0
+0.1
-0.0
+0.9
carbon source
Trisodium citrate (C); with MOPS
+1.0
-0.1
-0.1
-0.0
+1.0
carbon source
Trisodium citrate (C)
+0.8
+0.1
+0.1
-0.0
+0.9
carbon source
acetate (C)
+0.3
+0.7
+0.0
+0.0
+0.9
carbon source
Trisodium citrate (C)
+0.9
+0.2
+0.0
-0.0
+1.0
carbon source
D-Glucose (C)
+1.1
-0.2
+0.1
-0.1
+1.2
carbon source
D-Glucose (C)
+0.9
+0.3
+0.0
-0.1
+1.0
carbon source
NAG (C); with MOPS
+1.3
-0.1
-0.1
-0.1
+1.9
carbon source
NAG (C); with MOPS
+1.5
+0.1
-0.0
-0.1
+1.8
carbon source
acetate (C)
+1.0
+1.3
+0.1
+0.2
+0.7
carbon source
NAG (C); with MOPS
+1.5
+0.2
-0.1
-0.1
+1.9
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