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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS20350 and PFLU_RS20355 are separated by 25 nucleotides
PFLU_RS20355 and PFLU_RS20360 overlap by 4 nucleotides
PFLU_RS20360 and PFLU_RS20365 are separated by 23 nucleotides
PFLU_RS20365 and PFLU_RS20370 are separated by 3 nucleotides
PFLU_RS20350: PFLU_RS20350 - nucleoside hydrolase, at 4,594,108 to 4,595,136
_RS20350
PFLU_RS20355: PFLU_RS20355 - D-ribose pyranase, at 4,595,162 to 4,595,566
_RS20355
PFLU_RS20360: PFLU_RS20360 - ribokinase, at 4,595,563 to 4,596,480
_RS20360
PFLU_RS20365: PFLU_RS20365 - LacI family DNA-binding transcriptional regulator, at 4,596,504 to 4,597,526
_RS20365
PFLU_RS20370: PFLU_RS20370 - ABC transporter permease, at 4,597,530 to 4,598,507
_RS20370
Group
Condition
PFLU
_RS20350
PFLU
_RS20355
PFLU
_RS20360
PFLU
_RS20365
PFLU
_RS20370
carbon source
L-Arabinose (C)
-0.0
-1.6
-0.7
-0.3
+0.0
carbon source
succinate (C)
-0.1
-2.6
+0.3
+0.2
+0.0
carbon source
L-Arabinose (C); with MOPS
-0.2
-1.5
-0.4
-0.2
+0.3
carbon source
L-Arabinose (C)
+0.1
-1.7
-0.0
-0.2
+0.1
carbon source
L-Arabinose (C); with MOPS
-0.1
-0.9
+0.2
-0.3
-0.1
carbon source
Trisodium citrate (C); with MOPS
+0.0
-0.8
-0.1
-0.1
+0.1
carbon source
succinate (C); with MOPS
-0.0
-0.5
-0.1
-0.0
-0.1
carbon source
NAG (C); with MOPS
-0.1
-0.7
+0.1
-0.1
+0.2
carbon source
Trisodium citrate (C)
-0.1
-0.4
-0.0
+0.1
-0.1
carbon source
acetate (C)
-0.6
-1.3
+1.0
+0.1
+0.2
carbon source
Trisodium citrate (C)
-0.2
-0.8
+0.5
+0.1
-0.0
carbon source
succinate (C)
+0.1
-0.7
+0.1
+0.1
+0.1
carbon source
succinate (C); with MOPS
+0.1
-0.6
+0.2
+0.1
+0.0
carbon source
D-Glucose (C)
-0.1
+0.1
+0.3
-0.2
-0.2
carbon source
Trisodium citrate (C)
-0.1
-0.5
+0.4
+0.1
+0.0
carbon source
NAG (C)
-0.1
+0.4
+0.0
-0.2
-0.1
carbon source
NAG (C); with MOPS
+0.0
+0.6
-0.1
-0.2
-0.0
carbon source
D,L-Lactate (C)
-0.0
+0.5
-0.1
+0.0
-0.1
carbon source
D-Xylose (C)
-0.2
+0.1
+0.2
+0.4
-0.1
carbon source
L-Arabinose (C)
-0.0
+1.0
-0.2
+0.0
-0.2
carbon source
D-Glucose (C); with MOPS
-0.1
+0.3
+0.3
+0.0
-0.0
carbon source
succinate (C)
+0.2
-0.0
+0.3
+0.1
-0.0
carbon source
acetate (C)
+0.0
+0.3
+0.1
+0.3
+0.1
carbon source
D-Glucose (C); with MOPS
+0.1
+0.4
+0.2
+0.1
-0.0
carbon source
D-Glucose (C)
-0.1
+0.6
+0.3
+0.0
+0.0
carbon source
Trisodium citrate (C); with MOPS
+0.0
+0.3
+0.7
-0.1
+0.0
carbon source
D-Xylose (C)
+0.0
+0.4
-0.0
+0.6
-0.1
carbon source
NAG (C)
-0.1
+1.1
+0.2
-0.2
-0.1
carbon source
succinate (C); with MOPS
-0.0
+0.6
+0.4
+0.0
+0.2
carbon source
acetate (C)
-0.2
+0.9
+0.3
+0.4
-0.1
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